Pseudomonas lini DSM 16768, TU81_RS27465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 12_139937_18.4452, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCTCGGTGGCATGGCTTGCAATTACCACCGCGCGTGGCGCCACGGTACGGCGCTGGAAGTACGCATGCCGACCCTGAACCCGGACTTGTGTTTTCTG GGCTATGTGGCTTGGTGCCTGCGACGCAAGCGCGGCTATCTGGTCGGCATCGCCTTTGTTGACGAACAGATGCTATTCAGTGCCAGGATGGGCGAACAGG TGTGTCAGATCGAACGTTACCGCCGCCAGCATGACGCACACGACGACCTGCAGGATATTCAGGCCCTCGCTCTCGAATGGGTCCAGCAACACGCCGACGA GTTCTCCCACGACACGGTTCGCAAGGCATTTGCATAGCCTGTGCCGGTTTAAGGGACGTTCTGCCCCCTAAACCGGTGTCTGCCCATTGTCGAGCCACGG TGTAACGCGCTAAGGTTCAGCTCCCCGACGCGCTTAAATTTGCTGTGCTCCGCCGCGCGGGTTCGCTGGCGGCCGGCACCCGTGACCTGACGAGTAAACG
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| DNA Sequence for Gene |
>TU81_RS27465
ATGGCTGATTTACCGATCAACGACCTTAACGTCGCTTCCAACGAGACCCTGATCACTCCCGATCAGCTCAAGCGTGATATTCCTCTGAGCGACGCTGCCC TGCGCACCGTCACCAAGGGCCGCGAAGTCATTCGCAACATTCTTGATGGTACCGACCACCGCCTGTTCGTCGTGATCGGGCCGTGCTCGATCCATGACAT CAAGGCTGCCCACGAATACGCCGAGCGTCTGAAAGTGCTCGCGGCGGAAGTGTCCGATACCTTGTATCTGGTCATGCGCGTGTATTTCGAGAAGCCACGC ACCACCGTCGGCTGGAAAGGCTTGATCAACGACCCGTACCTGGACGACTCGTTCAAGATTCAGGATGGCTTGCACATCGGTCGTCAGTTGCTGCTGGACC TGGCCGAAATGGGCCTGCCGACCGCGACCGAAGCCCTCGACCCGATCTCCCCGCAATACTTGCAGGACCTGATCAGCTGGTCGGCGATCGGCGCACGCAC CACCGAATCCCAGACTCACCGTGAAATGGCTTCCGGCCTGTCCTCGGCCGTCGGCTTCAAGAACGGCACCGATGGCGGCCTGACAGTGGCCATCAACGCC TTGCAATCGGTTTCCAGCCCGCACCGTTTCCTGGGCATTAACCAGGAAGGTGGCGTGTCGATCGTCACCACCAAGGGCAACGCCTACGGTCACGTCGTGT TGCGCGGCGGTAACGGCAAACCGAACTACGATTCGGTCAGCGTCGCGCTCTGCGAGCAAGCGCTGAACAAAGCGAAGATCAAGCCGAACATCATGGTCGA TTGCAGCCACGCCAACTCCAACAAGGACCCGGCCCTGCAACCGCTGGTGATGGAGAACGTCGCCAACCAGATCCTCGAAGGCAACCAGTCGATCATCGGC CTGATGGTCGAAAGTCACCTGAACTGGGGCTGCCAGGCGATCCCGAAAGACCTCGCCGACCTGCAATACGGCGTGTCAATCACCGATGCCTGCATCGACT GGACCGCTACCGAGAACACCTTGCGCAGCATGCACGCCAAGCTCAAGGATGTGCTGCCCAAACGCAATCGCAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCCGTTTCGTTTCACGCATAAAAAAACGCCAGGTTCAAACCTGGCGTTTTTTTATGCGTTCGCTTTGTTCACAGCTTGGCGGCATGCCGCTGGTGGCG TTCCATGTAGCGCTCCACGTAGGAACACGATGGAATGACCGTGTAGCCCATTTCCTCGGCGTATTGCAGTGCCTGCTCGGTCAACGCCGCCGCGATGCCG CGACCACGCAGCGCGTTGGGCACAAAGGTGCGATAAATATCCAGGGTCTGTTTTCCCAGATCCATATAGGTCAGGTAGGCACGATAACCGTCCACAGTGG TCTCGAACTGATGACCAGCCTGGTCATGGTGGATGGACAACGCCTCGCTCATCACTACTCCTCGCGGGTCTTTAATTCTGACCCCTACCTTACCGATGTT TTTCCGGCGAAGGAACATCTACGCCACCCCGTGCCTGAATGGACACCGAGAGCAACACCCATCTCGCGCAACCGAGCACGTATCAAATAGTAGGCACCAT
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| Amino Acid Sequence |
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPINDLNVASNETLITPDQLKRDIPLSDAALRTVTKGREVIRNILDGTDHRLFVVIGPCSIHDIKAAHEYAERLKVLAAEVSDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKIQDGLHIGRQLLLDLAEMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSAVGFKNGTDGGLTVAINA LQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDSVSVALCEQALNKAKIKPNIMVDCSHANSNKDPALQPLVMENVANQILEGNQSIIG LMVESHLNWGCQAIPKDLADLQYGVSITDACIDWTATENTLRSMHAKLKDVLPKRNRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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