Pseudomonas lini DSM 16768, TU81_RS26720
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 11_244265_27.0086, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCATCAGCTGCTCGATGCGATGACGCATCTCGGCAGCGGCCTTGTTGGTGAAGGTCACCGACAGAATGGAGTGGGGCGAGGCGTTTTCGACCTGGATCA ACCAGGCGATACGGTGCACCAGCACTCGGGTTTTACCGGAACCAGCACCGGCCAGGACCAACTGACGACCCACGGAGGCAGCTACGGCCTGACGTTGGGC ATCGTTGAGGGAGTTCAGCAGAAGGGAGAGATCATCGCGCATCGGGGCATTCTAGGGTGCGCCGTCACACCGGGCAAACCGAGCTTTGCATTAGCCGATG AAAGAAGCACCGATGACGACCGGTCGGTCACCGGCTGCAAGCATTGGCGGAGCTCGTCTGGCTGCTTTTTTACCAAGGCGGGCGGCCCAAACTTTCGTCT ATTTTATGACCTTGGGCTGTTTGGTCCGGGCATTTGCTTGTGTATGCTCCGTTCACAATTCGGGCTCGCATGCTCACTAATAAGAACAAGAACATTGCCT
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| DNA Sequence for Gene |
>TU81_RS26720
ATGACCCTCAGCTCCGACCTGTCGGGCCCCTCTGTGGAGCCCCGGGTTATCCGCAAGCAGTACGCCATGGAAATGGCGGTCGAGCGCACGCGCCTGCTGT ACCAGGGCTCGCTGTTGCCTACGCTGTTCATGCTGATCAACGGTCTGGTGTGCGCCGGGCTGCTCTGGAGCCCACAGCGTTACTTCGTGGTGAGCGTCTG GCTGATCTGGTTATTGTCACTGGTGGCGTTGCGGGTGATTCAGGTCGCGGCCTTCGATTCGGCGATCCCCAACCGTCAGGCCCATCCGATCTGGCGTCGC ATGTTCATGCTCGGCTCTGCCATGACCGGCCTGACCCTGGCCGGTGCCGGCATCGCGTTGGTGCCCGCTGACAATTTCATGCAGCAAGCCTGGGTGTTCG GCCTGATCGGCGCCGCGGCGCTCTCGGCCAGCGTCGCTTATGCCGTCAGCCTGCCGGCTTTTCTGTCCTTTACCTTGCCCTGTCTGTTGCCGGCTATCGG CTACCTGTTTTGGGGCGGGGATGAGCAGGAACAGGGCTGGGGCTGGTTTGGCCTGATTTTGCTGGGTTCGTTAAGCGTGGTCGCCTGGCAGGTCAATCGG CTGATTAACCAAGGGCTGCTGCGACGCTTTCAAAATCAGGCCCTGATCGAGCATTTGCAGCAGGCGCAAAGTCGCAGCGATCAGCTCAACCACGAACTGG CCAAGGAAATCGACCAGCGCCGCCGCGCCGAAGACAAATTGCGCGAAACCCAGGTCGACCTCGAAAACCGGGTCGCACAACGCAGTCTGGAACTGGACGC CGCCAACCAGGCCTTGAGCAAGAGCGAAGCGCGACTGGCGCTGGCGTTGAAGGCGAGCGAACTCGGGCTGTGGGACTGGAACCTGCAGACAGACGAAGTC CATCACACCCAACTCCAGGAGCTGTTTGGCCTGGAGCCGGAATTCGTGACAGCGATGCTCCGCCACCTCAAGCCCAGGCTGCACCCCGACGACTTGCCAT CGCTGAAGCGGGCGCTGGTCGAGCACTTGAAGGGCCGCAGCGAGGATTATCAGATCGAGTATCGGGTGCGGCACGGCGATGGCCATTGGGTCTGGATCGA GGACCGTGGTCGAGCGGTGGAGCGCGCCGAGAACGGCCGGGTGATTCGCATGGTCGGCACCCGCCGCGATATAAGCGCCAGCAAGGGCCTGGAGCAACAG CGACAACTGGCGGCGACGGTGTTTGAGGCTGCCAGCGAAGGCATTGTAATTCTGGACCCGAATTACGCGCTGATTGCCGTTAATCAGGCCTTCAGTCGGG TTACCGGCTATGACATTGATGACATGCTCGGACGCAACGTGGTCGAGTTGCCCTGCAGCCGCGATGCCCGCCGGCATTACACGGCTATTCGTCAGGCGCT GGAGCAGGACGGTAGCTGGCAGGGCGAGCTGGTCGAAGCCCGCAAGAATGGCGAGTTGTATCCGCAATGGCTGCAACTGAATGCCGTGCGCGATACGCGG GGAAATGTGAGTCATATTGTCGGCTTCTTCGCCGATCTGTCCGCTCGGCGTGAATCCGAAGAACGTATGCGCTACCTCGCTCATTACGATGAACTCACGG GGCTGGCCAACCGTTCGTTGTTCCGCGAACGGCTGCACGAGGCTCATCAACGTGGGCGCCAGGGCGGTCGTCGCAGTCTGGCGTTACTGCACATCAATCT GGACCGTTTCAAGCTGCTCAACGATAGCCTCGGCCACGAAATTGCCGATGAGTTGTTACAAAAAATGGCCCGACGGTTGGTCAATGCACTGCCGGAAGCG GACACTATCGCCCGGCTGTCCGGCGATGAATTTGCAGTGCTGTTCGATACCTACGGCAACCTGTCGAGCCTGGCGCGCGTAGCGACCCGATTGTCGGCCA AGCTGCGTTTGCCAGTCACCGTCGAGGGTCATGAATTGGTGATGAGTGCGTCCATGGGCATCAGCTTGTTGCCGGACACCGCGCGGGAGATTTCCGCGCT GGTCAGCCAGTCGAACATGGCCATGCAGCATGCCAAACACTTGGGCGGCAACAACTTCCAGTTCTATACAGACAGCCTGCAAGCCAGCACGCTCGAGCGT TTGCAGCTCGAGAACCAGCTACGCAAAGCCATCGAAGAAAAACAGCTGAAAGTGTTTTATCAACCCAAACTCTGCCTCGCCACCGGCCGGCTGAATGCCG CCGAGGCGTTGGTACGCTGGAATCACCCGACCCTGGGCCAGGTACCGCCGGGGGATTTCATCGGTCTGGCCGAGGAAACCGGGCTGATCGGCGCTATCGG CGAGTTCGTTTTGCGCCAAGCCTGCTGGCAAGCGTGTGAGTGGCAGCGTCAGGGGCTGGAGCCGATTCGGGTGTCGGTCAACCTGTCGGTGCATCAACTG CGTCAGGGAAAACTGGTTAGCCTGGTGCGCCAGGTGCTGGAGGAAACCGGTCTGGCGCCGCATTACCTGGAACTGGAACTCACCGAAAGCCAGTTGCTGG ACAGTGTCGAGCACATCATTGCGACCTTCCAGCAGTTGCGCGACCTTGGGGTGAAACTGGCCATCGACGATTTTGGCACTGGCTATTCGTCGCTGAGCTA TCTCAAGCGCATCCCTGTGGACTACGTGAAAATTGATCAGGCGTTTATCCGCGGTCTGGGGGAGAGCAGTGAGGATGCGGCGATCACCCGGGCGATCATC GCCATGGCCCACGGCCTGTCGTTGAAGGTGGTGGCTGAAGGGGTGGAGCGGCCGGAGCAGCTGGAGTTTCTGAAAACCGAGCGCTGCGATGAAGTGCAGG GCTATTGGGTCAGCCGTCCTGTTGAAGCCGCCGACCTGGCCGAGCTTTTACGTCGCGACGCCAACCCTTTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGCAGGCTTCGCCAGCTGCTACAGCGACCGAGAGGGCTACATGGAGCGCATGTCGCATGAAATGGGGACATTGAGTTACGCATTGAGCAGGCAAAAAGC CGATTCATGTAGTATAACTACAAGCGTGCTACATCCCCGGCACCTGCCAATAACAAAGAGTCCGCCCCTTTGAATCTGCTGCAACACATCGCCCAGTCAC GCCACCTGTTACGCAAGTCGGAGCTCAAGGTCGCCGACCACGTGCTGCTTGACCCTGCGGCGGTGATGCACAGCTCCATGGCCGACCTGGCCCACAACGT GGGCATCAGCGAACCGACCATCGTGCGGTTTTGCCGCGCCATCGGTTGCTCCGGGTTTCAGGATTTGAAGCTGAAACTGGCGCAGAGCCTGGCGGCTGGC GCGAGCTTCGGGCAATTCGCGATCCATGAAGACGATTCGGTCGCCGATTACAGCCTGAAAATCTTCGACACCACCCTGCACACCCTGATGGAAGTTCGCG
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| Amino Acid Sequence |
>diguanylate cyclase
MTLSSDLSGPSVEPRVIRKQYAMEMAVERTRLLYQGSLLPTLFMLINGLVCAGLLWSPQRYFVVSVWLIWLLSLVALRVIQVAAFDSAIPNRQAHPIWRR MFMLGSAMTGLTLAGAGIALVPADNFMQQAWVFGLIGAAALSASVAYAVSLPAFLSFTLPCLLPAIGYLFWGGDEQEQGWGWFGLILLGSLSVVAWQVNR LINQGLLRRFQNQALIEHLQQAQSRSDQLNHELAKEIDQRRRAEDKLRETQVDLENRVAQRSLELDAANQALSKSEARLALALKASELGLWDWNLQTDEV HHTQLQELFGLEPEFVTAMLRHLKPRLHPDDLPSLKRALVEHLKGRSEDYQIEYRVRHGDGHWVWIEDRGRAVERAENGRVIRMVGTRRDISASKGLEQQ RQLAATVFEAASEGIVILDPNYALIAVNQAFSRVTGYDIDDMLGRNVVELPCSRDARRHYTAIRQALEQDGSWQGELVEARKNGELYPQWLQLNAVRDTR GNVSHIVGFFADLSARRESEERMRYLAHYDELTGLANRSLFRERLHEAHQRGRQGGRRSLALLHINLDRFKLLNDSLGHEIADELLQKMARRLVNALPEA DTIARLSGDEFAVLFDTYGNLSSLARVATRLSAKLRLPVTVEGHELVMSASMGISLLPDTAREISALVSQSNMAMQHAKHLGGNNFQFYTDSLQASTLER LQLENQLRKAIEEKQLKVFYQPKLCLATGRLNAAEALVRWNHPTLGQVPPGDFIGLAEETGLIGAIGEFVLRQACWQACEWQRQGLEPIRVSVNLSVHQL RQGKLVSLVRQVLEETGLAPHYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGESSEDAAITRAII AMAHGLSLKVVAEGVERPEQLEFLKTERCDEVQGYWVSRPVEAADLAELLRRDANPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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