Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CGCCCGCCGCGCCATCCAGCTGTGCGAGGAAGGCGAAGCGCCGCGCGGTTATGTCGAGGTGCGCCACATCGGCGGCCAGGTACGCAAGATGGTGCAGGAG GCGCTGGATGCCTTTGCCCGCTTCGACGCCGATCTGGCCCTGTCGGTTGCGCAGTACGACAAGACCGTCGACCGCGAGTACAAGACCGCGCTGCGCGAAC TGGTCACCTACATGATGGAAGACCCGCGGGCGATCTCCCGCGTGCTCAACGTCATCTGGGCGCTGCGTTCTCTGGAGCGCATCGGCGACCACGCGCGCAA CATCGCCGAACTGGTGATCTACCTGGTGCGTGGCACCGACGTCCGTCACCTGGGCCTGGCCCGGATGAAGGAAGAGGTACAGGGTCCTTCGGAATAATTC CCTTGCGCCCGGCCGGAATTGTGGCTGGGCAGTCACGTCGGCATGGCATCCTGCCAGCGGCCAAGGCTATCCTTCGCCTTGACGTTTCAGGGAGTCGACA
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DNA Sequence for Gene |
>PKB_RS28050
ATGAGCAAGGTGAGTGTTCTGGTCGTGGATGATGCGCCTTTCATCCGCGACCTGGTGAAGAAGGGCCTGCGCGACCATTTTCCCGGTCTGCGCATCGAGG AAGCGGTGAATGGGCGCAAGGCCCAGCAGCACCTCGCGCGGCAAGCGGTCGACCTGATCCTGTGCGATTGGGAGATGCCGGAGATGTCCGGTATCGAGCT GCTCGGCTGGTGCCGTGCGCAGGAACCGCTGAAGGAAGTGCCCTTCATCATGGTCACCAGCCGCGGCGACAAGGAGAACGTGGTCCAGGCCATCCAGGCC GGCGTCTCCGACTTCATCGGCAAGCCCTTCTCCAACGACCAGCTCGTCACCAAGGTACGCAAGGCCCTGAGCCGCAGCGGCAAGCTGGAAGCCCTGCTGG CTTCCGCGCCGCAGCGTAGCCTCGCCAGCGGCCCACCGAACGATTCCCTCGCTGCACTCACCGGTGGCAAGGCTGAAGTGGTGCGCCCGGCTGCGCCTGC CGCGCCGGCTCGCCCGGCAGCAGCTCCTGCCGCCGCTCCTGCACCACGTTCCGCCGCGCCGACCCAGGGCAAAGGTCAGGGGCAGCTGCGCTTGCCCAAC GTGAGCCTGCCTTGCGTGATTCGGGCGCTTAGCCTGAAGGAAGCACAACTGGTGGTGAAGCGCGGTCAGGCGCTGCCGCAGGTGCTGGAAAGCGCCGTGC TGGACCTGGACGAAGAGAACGAAGTGGCGCGCTTGAACGGCTACCTGCATTCGGTAGCGGCGCTTGAGCCCAAGCCGGACAGCGAGTGGCTCCTGCTGCT GCTGCGCTTCGTCGACCAGGACCCGCAGAAGCTCGATTACCTCTCGCGCCTGATCGCTCGAGGCAGCACGCAGCGGCATTACGTGCCGGGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACCGTCGGTCGGCTGCAATCCGTATTGCTTCACAGCCTGACGCTCGGCTGCTCGTCGCTGCCCGAGCGCGCTGCTAGTCTTGCTGGCGTCGCATACCTAT AACCAGAGTCGACATGCTGGGGCGCTTGATTTTCCTCTGCGGTCTATTGGCCGCCACGGGGCCGGCTGCGGCCGTGACCATCTACAAGTACACCGACGCC AATGGCGTGGTCACCTATACGGACAAGGCCGTGTCGGGCGCATCGGTGTTCGTCTTCCGCGACCGCATGGTCGAGCACCTCGAAGAGCAGGTGAAGCTGC AGACCCTCAAGGGCGAAGGCTTCGACACCCTGCAGGTGCGCAATGACCTCTACGCGCCAGTGGAGATCGAGCTGAGCGTCAACGCCGCGCAGAACACCGT GGGCGTGCCCGAGCAGCCGATCCACTGGGTGCTGGCGCCGCGCACCTCCATGCGTCTCGCTACCCTGAGCCCGCGCGACCCTGGGCGGCCCATGCAGTAC
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Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDAPFIRDLVKKGLRDHFPGLRIEEAVNGRKAQQHLARQAVDLILCDWEMPEMSGIELLGWCRAQEPLKEVPFIMVTSRGDKENVVQAIQA GVSDFIGKPFSNDQLVTKVRKALSRSGKLEALLASAPQRSLASGPPNDSLAALTGGKAEVVRPAAPAAPARPAAAPAAAPAPRSAAPTQGKGQGQLRLPN VSLPCVIRALSLKEAQLVVKRGQALPQVLESAVLDLDEENEVARLNGYLHSVAALEPKPDSEWLLLLLRFVDQDPQKLDYLSRLIARGSTQRHYVPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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