Pseudomonas knackmussii B13, PKB_RS27920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAGGCGATCTTCCGCGCCCGCCAGCTGCGCCAGGACGCCCAGCAGAAGCGCCACGCGGAGCTGCTGAGCGAATTGCTGGCGCCGTCGGCATAACAAACGG CTCTTCCATAAAGATTGGCGATTTTTTAGACTATCCAGTCCGCCCGGGCATCCGGGTTCAATTTTCCGCAACGAGGAACACCATGGCCCGCGTCACCGTC GAAGACTGCCTGGACAACGTCGATAACCGTTTCGAGCTGGTCATGCTCGCCACCAAGCGCGCTCGCCAACTGGCCACCGGCGGCAAAGAGCCGAAGGTAG CCTGGGAAAACGACAAGCCCACCGTGGTCGCCCTGCGCGAGATCGCTTCGGGCCTGGTCGATGCTGAAATCGTTCAGCAGGAGGACGTGGTTGAAGAAGA GCCGCTGTTCGCTGCCTTCGAAGACGAGGCCAACAACGAGGCCCTGTAAGTCGATGTCCGGCCGACGACCGCAGCCGTCCACTCGGCAGGGGGTGCTCCC
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| DNA Sequence for Gene |
>PKB_RS27920
TTGCCGAGCATAGATGCCTTCGCCGACCGGCTTTCGAGCTACCTCGGCCCGGAGGACCAGGTCAACCTGGTCCGCCGCGCCTACTACTACGCCGAGCAGG CCCACGACGGCCAGCGCCGCCGCAGCGGCGAGCCGTACGTCACCCATCCGCTCGCCGTAGCCAACATCCTCGCCGATATGCACATGGACCATCAGAGCCT GATGGCCGCGATGCTGCATGACGTGATCGAGGACACCGGCATCGCCAAGGAAGCGCTCACCGCGCAGTTCGGCGAAACCGTCTCCGAGCTGGTGGACGGG GTCAGCAAGCTGACCCAGATGAACTTCGAGTCCAAGGCCGAGGCGCAAGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATCCGCGTGA TCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGCGAGAAGCGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTA CGCGCCCATCGCCAACCGGCTGGGCATGCACAGCATGCGCGTTGAGTTCGAGGACCTGGGATTCAAGGCCATGCACCCGATGCGCTCCGAGCGCATCCGC CAGGCGGTGAAGAAGGCTCGCGGCAACCGTCGCGAGATCGTCGGCAAGATCCAGGAGTCGCTGGTCAACTGCCTCGCCCGCGAGGGCATGGAAGGCCAGG TCCTGGGCCGCGAGAAGCACCTGTTCAGCATCTACAAGAAGATGCGCGGCAAGCGCCGGGCGTTCAACGAAATCATGGACGTCTATGCCTTCCGCATCAT CGTCGACAAGGTAGACACCTGCTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGTTCCCCGGGCGCTTCAAGGACTACATCGCGATTCCCAAG GCCAACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGCGTGCCCATCGAGATCCAGATCCGCACCCGCGAGATGGAAGAGATGGCCAACC ACGGCATCGCCGCGCACTGGCTGTACAAGTCCAGCGAGGAAGAGGCGCAGAAAGGCACCCACGCCCGCGCCCGCCAGTGGGTCAAAGGCATCCTCGAGTT GCAGCAACGCGCGGGCAACTCCCTCGAATTCATCGAGAACGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTCACGCCCAAGGGCCGCATCATG GAGCTGCCCAAGGGCTCCACGGCCGTCGACTTCGCCTACGCGGTGCATACCGACGTCGGCAACAGCTGCATCGCCTGCCGCATCAACCGCCGCCTGGCGC CACTGTCCGAACCGCTGCAGAGCGGCCAGACGGTGGAGATCGTCACTGCGCCGGGCACCCGGCCGAACCCGGTCTGGCTCAGCTTCGTGGTCACCGGCAA GGCACGTACGCACATCCGCCATGCGCTCAAGCTGCAACGCCGCTCGGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGACCCTGGCCGGCTTCGAC AGCCACCTGGATAAGATTCCGCAGGAGCGCATCCAGGCGGTACTCGCCGAGTACCGCATGGAAGTCTTCGAGGACCTGCTCGAAGAGATCGGCCTGGGCA ACCGCATGGCGTACGTGGTCGCGCGCCGCCTGCTCTCCAGCGAGGGCGAAGGCGTCAGCAGCGCGCCGAGCGCCGAAGGGCCGCTGGCGATCCGCGGTAC CGAGGGCCTGGTGCTGAGCTACGCCAAGTGCTGCACGCCGATCCCGGGAGATCCCATCGTCGGCCACCTGTCCGCCGGCAAGGGCATGGTGGTGCACCTG GAAAGCTGCAAGAACATCCTCGATATCCGCCACAACCCGGAAAAATGCATCCAGCTCAGCTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGTTGC GCGTCGAGCTGGAACACCAGCGCGGCCTGATCGCCCTGCTGGCGACCAGCGTCACCGCCGCCGACGGCAATATCGAGAAGATCAGCATGGACGAGCGCGA CGGTCGCATCAGCGTTGTCCAGTTGGTCGTCAGCGTGCATGACCGTGTGCACCTGGCCCGCGTCATCAAGAAGCTGCGCGCCCTCAAGGGTGTCGTACGC ATCACCCGCGTGCGCAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCACCCCTCGAAGGAGTCGACATGACCAAGACCGTAATCCACACCGACAAGGCCCCGGCGGCCATCGGCACCTACTCCCAGGCGATCAAGGCTGGCAA CACCGTCTACGTCTCCGGCCAGATCCCGCTGAACCCGCAGACCATGGAACTGGTCGAGGGCTTCGAGGAGCAGGTCGTCCAGGTGTTCGAGAACCTCAAG GCTGTGATCGAGGCTTCCGGCGGCTACCTGCACGACGTCGCCAAGCTGAACATCTTCCTCACCGACCTGTCGCACTTCGCCAAGGTCAACGAGATCATGG GCAAGTACTTCACCCAGCCCTACCCGGCGCGCGCCGCCATCGGCGTGGCCGCCCTGCCCAAGGGCGCCCAGGTCGAGATGGACGCCATCGTCGTCCTCGA ATAATCCTGACCTGTCGAACGGGGCCCTCTCGCGGCCCCGTTCGCTTTTCCCGTGTTAGTCCGCAAGGAGCACTCCCGCATGCGTCGCGCCCTCGTCCTG
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDAFADRLSSYLGPEDQVNLVRRAYYYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGETVSELVDG VSKLTQMNFESKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSMRVEFEDLGFKAMHPMRSERIR QAVKKARGNRREIVGKIQESLVNCLAREGMEGQVLGREKHLFSIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPFPGRFKDYIAIPK ANGYQSLHTTLFGMHGVPIEIQIRTREMEEMANHGIAAHWLYKSSEEEAQKGTHARARQWVKGILELQQRAGNSLEFIENVKIDLFPDEVYVFTPKGRIM ELPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGQTVEIVTAPGTRPNPVWLSFVVTGKARTHIRHALKLQRRSESISLGERLLNKTLAGFD SHLDKIPQERIQAVLAEYRMEVFEDLLEEIGLGNRMAYVVARRLLSSEGEGVSSAPSAEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHL ESCKNILDIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLATSVTAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALKGVVR ITRVRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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