Pseudomonas knackmussii B13, PKB_RS24550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGCGACGCCGAGGCCAACGCCGAGGAAGACCGCAAGTTCGAAGAACTGGCCGCTGCCCGCAACCAGGGTGATGCGCTGGTCCACGCGACTCGCAAGAT GGTCACCGAGGCTGGTGACAAGGCCACCGCTGACGAGAAGGCTGCCATCGAGAAAGCTCTCGGCGAGCTGGAAGTTGCCGTGAAAGGCGACGACAAGGCC GAGATCGAGGCGAAGATGAACGCGCTGTCCCAGGCGTCCACTCCGCTGGCTCAGAAGATGTACGCCGAGCAACCGCAGCCTGGTGCTGCCGCTCAAGGCG ATGGCGCTGACGACAAGGCTGGCGACGATGTCGTCGACGCCGAGTTCGAAGAGGTCAAGGAGAACAAGTAAGCCGCGTGCTTGCTTCCGCTCCGGCGCAC CGACCCCCGACCAGCGTGTCGGTGCGCATGAACCGTCGCGCGGGGGCTTGCTCCCGCGTCGGCGTGTCTGGGGGAGAGGTTTTGAAGGTGCAAAGAATTT
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| DNA Sequence for Gene |
>PKB_RS24550
ATGGCCAAACGTGATTTTTACGAGGTACTGGGTGTCGAGCGTGGCGCCAGCGAAGCGGACCTGAAGAAGGCCTATCGCCGGCTGGCCATGAAGCACCACC CGGACCGCAATCCCGGCGACAAGGAAGCCGAGGATAAATTCAAGGAGGCCAACGAGGCGTACGAGATCCTGTCTGACGCCAGCAAGCGTGCAGCCTACGA TCAGTACGGTCACGCCGGTGTCGACCCGCAGATGGGTGGTGGCGCTGGAGCCGGCTTCGGCGGCGCGAGCTTCTCGGACATCTTCGGCGACGTCTTCAGC GATTTCTTCGGTGGCGGCGGCGGTGGTCGTGGCGGTCGCGGCGGCCCGCAGCGCGGCGCCGATCTGCGCTACACGCTGGACCTGGATCTTGAAGATGCCG TGCGCGGCACCACCGTGACCATCCGCGTGCCGACCCTGGTTGGTTGCAAGACTTGCAGCGGCAGCGGCGCCAAGCCCGGCACCTCGCCGGTCACCTGCAC CACCTGCGGCGGCATCGGCCAGGTGCGCATGCAGCAGGGCTTCTTCTCGGTGCAGCAGACCTGCCCGCGTTGCCATGGCAACGGCAAGATGATCAGCGAT CCATGCGGCACCTGCCACGGCCAGGGGCGAGTGGAAGAGCAGAAGACCCTGTCGGTCAAGGTGCCGGCGGGTGTCGATACCGGCGACCGTATTCGTCTGT CCGGCGAAGGCGAGGCCGGTGCCCATGGTGGCCCCGCGGGCGATCTCTACGTGGTGGTGAACGTGCGCGAGCACGACATCTTCCAGCGCGATGGCAAGCA TCTGTACTGCGAAGTGCCGATCAGCTTCGCCGACGCAGCCCTGGGTGGTGAGCTGGAAGTGCCGACCCTGGATGGTCGCGTGAAGCTGAAGATCCCCGAG GGTACTCAGACCGGCAAGCTGTTCCGTCTGCGCGGCAAGGGCGTGGCCCCGGTGCGCGGCGGCGGTGCCGGCGACCTGATGTGCAGGGTGGTGGTGGAAA CGCCGGTCAACCTGGACAAGCGCCAGCGCGAACTGCTCGAAGAGTTCCGCGGCAGCCTGCAGGGCGACACTTCCCACTCGCCCCGTGCCAGTGGCTGGTT CGAAGGCATGAAGCGCTTCTTCGACGACCTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTTGAAGCTGCAGGTTGCAGGCGGCGGCCCTCGAGACGGGCGCCGCTTGCAGCTTGGGGCTTGCAGCTTGGAGCTGACTAAATGCGACGTATAGCTGTAA TGGGCGCCGCTGGGCGCATGGGCAAGATCCTTATCGAGGCGGTGCAGCAGACCAATGGTGGCGCCGGCCTGACCGCCGCCATCGATCGTCCGGACAGCAC GCTGGTCGGTGCCGATGCTGGAGAGCTGGCAGGTCTGGGGCGCATCGGCGTGCCGCTGTCGGGCGACCTGCTCAAGGTGGCTGACGAGTTCGATGTGCTG ATCGATTTCACCCACCCGACCGTCACCCTGAAGAACCTGGAAATCTGCCGCAAGGCGGGCAAGGCCATGGTCATCGGCACCACCGGTTTCTCTGCTGAGG AGAAGGTGCTGATCGCCGAGGCGGCCAAGGAGATCCCGATTGTCTTCGCCGCCAACTACAGCGTTGGCGTGAACCTCTGCCTTAAGCTGCTGGACACTGC
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| Amino Acid Sequence |
>molecular chaperone DnaJ
MAKRDFYEVLGVERGASEADLKKAYRRLAMKHHPDRNPGDKEAEDKFKEANEAYEILSDASKRAAYDQYGHAGVDPQMGGGAGAGFGGASFSDIFGDVFS DFFGGGGGGRGGRGGPQRGADLRYTLDLDLEDAVRGTTVTIRVPTLVGCKTCSGSGAKPGTSPVTCTTCGGIGQVRMQQGFFSVQQTCPRCHGNGKMISD PCGTCHGQGRVEEQKTLSVKVPAGVDTGDRIRLSGEGEAGAHGGPAGDLYVVVNVREHDIFQRDGKHLYCEVPISFADAALGGELEVPTLDGRVKLKIPE GTQTGKLFRLRGKGVAPVRGGGAGDLMCRVVVETPVNLDKRQRELLEEFRGSLQGDTSHSPRASGWFEGMKRFFDDL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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