Pseudomonas knackmussii B13, PKB_RS24440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pkc00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.1370.10 K Homology domain, type 1 IPR036612 K Homology domain, type 1 superfamily 551 622 4.2E-30
FunFam G3DSA:3.30.230.70:FF:000002 Polyribonucleotide nucleotidyltransferase - - 236 550 0.0
CDD cd11364 RNase_PH_PNPase_2 - - 324 545 0.0
CDD cd04472 S1_PNPase - - 623 690 6.1306E-35
PANTHER PTHR11252 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE IPR012162 Polyribonucleotide nucleotidyltransferase 3 695 0.0
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 621 691 7.2E-24
NCBIfam TIGR03591 JCVI: polyribonucleotide nucleotidyltransferase IPR012162 Polyribonucleotide nucleotidyltransferase 9 692 0.0
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 235 550 0.0
SMART SM00322 kh_6 IPR004087 K Homology domain 553 618 5.1E-14
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 325 457 8.2E-22
Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain 242 321 3.7E-23
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 620 691 3.2E-17
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 15 143 1.2E-20
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 3 143 2.18E-49
CDD cd11363 RNase_PH_PNPase_1 - - 5 233 1.48342E-111
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 621 697 5.93E-21
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 460 529 7.3E-6
PIRSF PIRSF005499 PNPase IPR012162 Polyribonucleotide nucleotidyltransferase 1 700 0.0
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 146 210 1.5E-10
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 144 234 3.93E-26
FunFam G3DSA:3.30.230.70:FF:000001 Polyribonucleotide nucleotidyltransferase - - 2 234 1.5E-104
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 1 234 6.3E-84
CDD cd02393 KH-I_PNPase - - 552 621 8.25263E-30
SUPERFAMILY SSF54791 Eukaryotic type KH-domain (KH-domain type I) IPR036612 K Homology domain, type 1 superfamily 556 641 1.21E-23
FunFam G3DSA:3.30.1370.10:FF:000001 Polyribonucleotide nucleotidyltransferase - - 551 619 3.9E-26
FunFam G3DSA:2.40.50.140:FF:000023 Polyribonucleotide nucleotidyltransferase - - 623 693 3.7E-33
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 451 550 5.47E-29
Pfam PF00013 KH domain IPR004088 K Homology domain, type 1 559 613 6.0E-12
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 623 694 2.1E-26
Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. IPR012162 Polyribonucleotide nucleotidyltransferase 2 694 30.639881
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 294 489 2.94E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.