Pseudomonas knackmussii B13, PKB_RS22970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGATGCCCAGCACCGGTTTGCCCTCGGCGTCCTTCTCGTCCATCAGCATGTTGGTCTGGGCCAGGCCCTTGACCACGGTCAGCGGGTACTCGAGCTCA CGCTGGATCTGGCTGGCCTGGGCGCGAGCCAGGGCGACCAGGCGCTCGTTGATGACCTGCTCCAGCAGTCCCTGGGTCCGCTCCTGGACCAGGCTCTGGG TTCGGCCACCGGCGAACAGCGCGTAAAGCACCAGCGCCGCCACCACTGCAAGGACGCTGGCTCCGGCCAGCGCCACCACGGAAAACTGGATCGACTTGAA CTTCATGACGAATTACTCGCGTGCCAGGGACAGCCTGTCCTTCTATATCGACCGGGCTAGGGGATTTCCTTAGGCAGGCGTTGTAATGGGTTGTAACGCG GATGTGTCGAGGCGCTTGCGGAGCTGTTGCCCGCGTTCGGGGGGACGCCTACCATTGCGCGCTGTCCAAGGGACGAATGTGCTTCGTCAGGAGAACCACT
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| DNA Sequence for Gene |
>PKB_RS22970
ATGTCCACCCGTTTCCGTTTCGCCGCCCTGGTCCCGGTCCTGCTGCTGACCGCTTGCCAGCCGGTGAACACCACCAGCGGCGGTGCCGTTGGCGTACAGC GTCAGCAGTACATGTTCAGCATGCTGTCCAGCCAGCAGGTCGACCAGATGTACTCGCAGTCCTATCAGAAGACCGTCGGCGAGGCGAAGACCGCCGGCAA GCTCGACAACGACAGCGCCGACGGCAAGCGCGTCAAGGCCATCGCCGCGCGCCTGATCCCGCAGACCGGCGCCTTCCGCCAGGACGCCCCGGGCTGGGAC TGGCAGGTCAACCTGGTGAAGAGCGACGAGCTCAACGCCAACTGCGGCCCCGGCGGCAAGATCATCTTCTACAGCGGCCTGATCGATAAGCTGCACCTCT CCGACGACGAGATCGCCGCGGTGATGGGCCACGAGATCGCCCACGCCCTGCGCGAGCACGGCCGCGAGCAGATGTCCCGCGCCTACGCCGTGCAGATGGG CGAGAGCCTCGGCGGTGCGCTGCTCGGCCTGGGCCAGGGTGGCATGCAGATGGCCGACCAGGTGGTGCAGTACAGCCTGACCCTGCCCAACAGCCGGCAG AACGAGACCGAGGCCGACCTGATCGGCCTGGAGCTGGCCGCCCGCGCCGGCTACAACCCCAACGCCGCGCTGACCCTGTGGCAGAAGATGGGCCAGGCTG GCGGTGGCGAGGCGCCGCCGGAGATCCTCAGTACCCACCCGGCGGACAGCACGCGCATGGCCAATCTGCAGGCCGCCATTCCCAAGGTGATGCCGCTGTA CGAACAGGCCAAGGGCCGCAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACACGGGGGGATCGAGCGCCTCGATCCGTTGCTGCCGGCCGCACGCGCGGCCGGCCCGGGCATCAACAGGGAGCGCCTGTGAAAATCGCAGTACTGGGA GCCACCGGGCTTCTCGGCCACCATGCCGCCCGCGCCATCAAGGCTGCCGGGCACGAGTTGGTGCTGATCCATCGACCTTCCTCGCAGATCCAGCGCCTGG CCTATCTGCAGCCGGAGTGCCGCGTCGCCGAGCTGTACGACTACCGTGGTCTGGAGCGCGCCCTGAGCGGGCTCGACGCGGTGATCTTCAGCGCCGGCTA CTACCCCAAGCGGCCGCGTCGCTGGCAGGAAGAAGTGGCCAGCGCGCTGGACCAGACCAACCATTTCTACGCCGCCTGCCAGCACAACAAGGTGCCGCGC ATTCTTTATGTCGGCTCGGCCTTCGCCCTGCCCATGCACCCGCAGGGGCTGCCCGGGCACGAAGGGCTGTTCTACGAAGGCCTGCCCACCGGCAAGAGTG
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| Amino Acid Sequence |
>peptidase M48
MSTRFRFAALVPVLLLTACQPVNTTSGGAVGVQRQQYMFSMLSSQQVDQMYSQSYQKTVGEAKTAGKLDNDSADGKRVKAIAARLIPQTGAFRQDAPGWD WQVNLVKSDELNANCGPGGKIIFYSGLIDKLHLSDDEIAAVMGHEIAHALREHGREQMSRAYAVQMGESLGGALLGLGQGGMQMADQVVQYSLTLPNSRQ NETEADLIGLELAARAGYNPNAALTLWQKMGQAGGGEAPPEILSTHPADSTRMANLQAAIPKVMPLYEQAKGRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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