Pseudomonas knackmussii B13, PKB_RS22205

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009245 lipid A biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.1700.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.1700.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pkc00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 2 279 47.020355
FunFam G3DSA:3.30.1700.10:FF:000001 UDP-3-O-acyl-N-acetylglucosamine deacetylase - - 128 303 9.5E-97
Gene3D G3DSA:3.30.1700.10 lpxc deacetylase, domain 2 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal 128 303 4.4E-73
Gene3D G3DSA:3.30.230.20 lpxc deacetylase, domain 1 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal 1 127 4.1E-52
FunFam G3DSA:3.30.230.20:FF:000001 UDP-3-O-acyl-N-acetylglucosamine deacetylase - - 1 127 1.3E-68
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 134 277 9.1E-53
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 3 124 1.06E-42
PANTHER PTHR33694 UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 3 284 3.7E-90
Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 4 275 3.7E-108
NCBIfam TIGR00325 JCVI: UDP-3-O-acyl-N-acetylglucosamine deacetylase IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 2 298 1.5E-122

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.