Pseudomonas knackmussii B13, PKB_RS22170

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0016310	phosphorylation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00512	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0000155	phosphorelay sensor kinase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00512	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00304	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	272	403	1.1E-14
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	599	613	1.6E-15
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	279	399	1.29E-13
PANTHER	PTHR43065	SENSOR HISTIDINE KINASE	-	-	252	671	3.9E-62
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	187	238	4.2E-10
Gene3D	G3DSA:3.30.565.10	-	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	507	675	5.6E-40
SMART	SM00388	HisKA_10	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	416	506	6.3E-5
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	617	627	1.6E-15
SMART	SM00387	HKATPase_4	IPR003594	Histidine kinase/HSP90-like ATPase	554	671	2.0E-27
CDD	cd00130	PAS	IPR000014	PAS domain	300	398	1.96042E-4
SUPERFAMILY	SSF47384	Homodimeric domain of signal transducing histidine kinase	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	412	505	3.73E-7
Coils	Coil	Coil	-	-	234	275	-
SUPERFAMILY	SSF158472	HAMP domain-like	-	-	189	238	1.57E-6
Pfam	PF08448	PAS fold	IPR013656	PAS fold-4	298	401	2.0E-9
CDD	cd00082	HisKA	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	420	502	9.90819E-6
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	630	648	1.6E-15
Gene3D	G3DSA:6.10.340.10	-	-	-	160	247	7.3E-13
Gene3D	G3DSA:1.10.287.130	-	-	-	408	504	2.3E-21
CDD	cd06225	HAMP	-	-	192	237	1.70545E-8
SMART	SM00304	HAMP_11	IPR003660	HAMP domain	189	242	1.3E-10
SUPERFAMILY	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	505	669	1.2E-38
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	655	668	1.6E-15
Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR003594	Histidine kinase/HSP90-like ATPase	558	670	4.9E-22
Pfam	PF00512	His Kinase A (phospho-acceptor) domain	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	418	502	4.1E-8
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	292	406	4.7E-7
Coils	Coil	Coil	-	-	556	576	-
SMART	SM00091	pas_2	IPR000014	PAS domain	291	356	3.2E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.