Pseudomonas knackmussii B13, PKB_RS22145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGGGCGTTCTCCCGGGCGTTACCCGCACAGCGGCGTCCGATATGCTGTACGGCAGCCTCGCCAGCCTCGGTATCAGTCCCATGAGCCCGCCCAAACA GCCCTCCACTTCCCAACCGACCGCCGATCTCGGGCTGGAAAGCCTGCAGGTTCGTCGAGAGGCCATTTACCTGACGCTCGCCCAGGTGCCAGAGGGCTTC GTCATCAGCTACGGCGAGCTGGCCCGCCTGGCCGGCCTGGGACGCTCGGCGCGCCTGGTCGGACGCATCCTCAGCCAGTTGCCGGAAGGCTCGCGGTTGC CTTGGCACCGGGTGATCGCTGCTGGCGGCCGCATCAGCCTTCCGCAGGGCACCCCAGGTGGCGAAGAGCAGCGGGCACGATTGCGTGCCGAGGGGGTCCG AATCCATAACGATCGGGTGGACATACGTCGGCATGGCTGGCTTAGCGCCGGGCAGTCCTAGTAAAGTCCGCGATAATTTTTGCGTGCTGGAACCCCCTTC
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| DNA Sequence for Gene |
>PKB_RS22145
ATGAAACAGCATTCCTGGCGAGAGGCGCTGGTTGCCTATAAATCTCTCGCCAGCCTCGCGCTTTTGATGCTCGGCTTCGCCGCCGGACTGCCTACGATGC TGGTTTTCACCACCCTCTCGGTGTGGTTGCGCGAAGCCGGCGTGGCGCGGGAAACCATCGGTTTCGCCAGCTGGCTGGGCCTGGTTTACGCCTTCAAGTG GGTCTGGTCGCCGATGCTCGACCAATGGCGCCTGCCTTGGATCGGCAAGCTCGGCCGGCGTCGTTCCTGGCTGGTGTCCTCGCAGGCGATGATCGCCATC GGCCTGCTCGGCATGGCGCTGTGCAACCCGCAGTACCACCTGGCCTGGCTGATCGGCCTGGCGCTGCTAGTGGCCTTCGCTTCGGCCACCCAGGACATCG CCATCGACGCCTATCGCCTGGAGATCGCCGAGAACACCCGCCAGGCAGCACTCGCTGCGTGCTACATGACCGGCTATCGCGCCGCCGTGCTGCTGGCCAG CGCCGGTGCGCTGTTCCTGGCCGAGTGGTTCGGCTCGAGCAGCCTGCACTACAGCCAGAGCGCCTGGAGCCTGACTTACGGGTTGTTCTCGCTGCTCATC CTGCCCGGGCTGATCAGCAGTCTGCTGATGCGCGAACCACCGTTGAACGTGCAGCCGCAACCTGTGGCCAACTCCGCCTACGCCTTCAACCACCAGCTGT TCTCGGTACTGCAGCTGCTGGTGCTGCTGATCTCGCTGCCCGCCATGCTCACTGCGCTGACCAACCAGGCCTGGCCGCGAGCGGGGCTGTACGCCCTGTT CATCGTGCTGTGCCTGAGCCCGGGCGGCCGCCGACAGATCCGTCCGGTGCGCGAACTGCTCTCGCGAGTGCGTCGTCCGCTGCTCGTCGCTGCGCACGGC AAGGGCATCCCGCAATTCGACTTCGTGCACCAGGCCGTCTCGGTGATCGTGCTGATCATCCTGCTGGTCACCGGTACTGCCATGTTCAATTGCGCGAGCA CGGGCAAATGGTGGCTGGCCAGCCTGTATCTACTGATCGCCCTGAGCTGCTTCTCGGCGCCCGGCCGCCTGCTGATGGCGCCGGTGCTGACGCCCATCAC CGAGTTCATCCGCCGCTATCGCTGGCAGGCGCTGCTGCTGCTCGGGCTGATCTCCACCTATCGCCTGTCCGATACCGTGATGGGCGTTATGGCCGGGGTC TTCTACATCGACATGGGCTTCTCCAAGGAAGTCATCGCCACCGTCAGCAAGCTGTTCGGCGTGATCATGACCCTGCTGGGCGCAGGCGCGGGCGGCATCC TCATCGCCCGCTTCAACATCCTGCCCATACTGTTCCTGGCCGGCGCCGCCTCGGCGGGCACCAACCTGCTGTTCGCCATGCTCGCGCACATGGGGCCGAT CAGCGATCCGCTGATCATCCAGGAGGATGTCTTCACCCTGCTGAAGACCATGGAGCCGCACATCAGCATGTTCGTGCTGACCATCATGCTCGACAACTTC AGCGGCGGCCTGGCGGCCTCGGCCTTCGTCGCCTACCTGTCGAGCCTGACCAACCTGAAGTTCTCCGCCACCCAGTACGCCATGCTCAGCTCCACCATGC TGCTGCTGCCGCGCTTCATCGGCGGCTACTCAGGCAGCATGGTCGAGCACATGGGTTACGAGCGCTTCTTCTTCCTCACCGCACTCCTCGGCATCCCGAC CCTGCTGCTGATCGGCTGGCTCTGGCTGCGGCGCAAGAACGGCATGCCCAATGGCGCCCCGCAGGAAGAGTCTCCGGAGCAAGCGCCGAGCAGCGGCCGC ACGGAGCATGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCACTGCGCAGAAGAAATGAAAGAGGCCGGCATTGCGCCGGCCTCTTTGCATTGCGCCTTCGGTCAGTCGACCAGGCTGGTTTCCTCGCTGCCACGCA GCACACGCACCACGCGGCTTGGCAGGGCCAGGCCGATATCGCGGTCGAGCAGGCGGCGACGCACTTGCTCGTTTAGCATGAAGGTCACCGCACTGAAATC GCCGTTGGCCGTCCAAACACGCAGCGACAGGGTCACCGAGTTTTCGCCGAGCGCCGCGACTACCACCGCCGGCTGCGGGGTCTTCAGGACGCGCGGGTCC TCCGCCAGCTCCAGGAGGATGGCGCGGGCGCTGTCCAGGTCGGCGTCGAAGGCCAATTTGACGTCGAAGATGACCTGGCGACTGGCCTGCCGCGAGGCGT TGGTGATGATGCCGTTGGATAGCGCGCCATTGGGCAGGATGACCGTCCGGTTGTCCCCGGTGCGCACGATGGTGTGGAAGATCTGGATGCTGTCCACGGT
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| Amino Acid Sequence |
>permease
MKQHSWREALVAYKSLASLALLMLGFAAGLPTMLVFTTLSVWLREAGVARETIGFASWLGLVYAFKWVWSPMLDQWRLPWIGKLGRRRSWLVSSQAMIAI GLLGMALCNPQYHLAWLIGLALLVAFASATQDIAIDAYRLEIAENTRQAALAACYMTGYRAAVLLASAGALFLAEWFGSSSLHYSQSAWSLTYGLFSLLI LPGLISSLLMREPPLNVQPQPVANSAYAFNHQLFSVLQLLVLLISLPAMLTALTNQAWPRAGLYALFIVLCLSPGGRRQIRPVRELLSRVRRPLLVAAHG KGIPQFDFVHQAVSVIVLIILLVTGTAMFNCASTGKWWLASLYLLIALSCFSAPGRLLMAPVLTPITEFIRRYRWQALLLLGLISTYRLSDTVMGVMAGV FYIDMGFSKEVIATVSKLFGVIMTLLGAGAGGILIARFNILPILFLAGAASAGTNLLFAMLAHMGPISDPLIIQEDVFTLLKTMEPHISMFVLTIMLDNF SGGLAASAFVAYLSSLTNLKFSATQYAMLSSTMLLLPRFIGGYSGSMVEHMGYERFFFLTALLGIPTLLLIGWLWLRRKNGMPNGAPQEESPEQAPSSGR TEHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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