Pseudomonas knackmussii B13, PKB_RS16705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAACCGACCAGACAGTCTCCGTTAGACCTTCGTGTAGTAGTCCAAAAAAAACACTACAAAACGTTTGACGAACATTTGTTTGAAAGGCATGATGGCCTCG CTCCCGCTAACCAGGGGCCCTGAATAGGGCCTCCGGATCGAGCTCCGGCCCACTCGCCGAACTGATCCGTGTTGTTACAGCCCACAAGGCGAAATGACGA GGTTGCGACTGGCAAGAAGTTGTCCTGAGGGACGGGGAAGCAACCACGTATCAGCAAGATGGTCGAATGCAGCCATTCGCCCTCGCCCAACGGCAGCCAC GAGCCGGCAAGCGATCTCGAATGCCACCGCTGCGGTCATCTACCTGTTCGCCCGCTCCACCCCTCCTCTCAGCGTCAATCCTTCCTTCCGGTCGTCATTT CGCCATCTGCGGCGAGCATCCCGCTTCAATACCGTGAATTCACAGGTCTTGCGTGGGAAGTCGGTGCTCAACCAACACATTTTTTGAAGGATTGTTGACC
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| DNA Sequence for Gene |
>PKB_RS16705
ATGTCCGCATATCAGAACGACATCAAGGCCGTTGCCGCCCTGAAAGAGAAGTTCGGCAGCAGCTGGAGCGCTATCAACCCCGAGTCCGTCGCCCGTATGC GCGCCCAGAACCGCTTCAAGACTGGCCTGGACATCGCCAAGTACACCGCGGCCATCATGCGCAAGGACATGGCCGAGTACGACGCCGACTCCTCCGTCTA CACCCAATCGCTGGGTTGCTGGCACGGCTTCATCGGTCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTTGCCGCGCTGCGTTCCGACTTCGGCCCGCTGCCCGACCAGTCCATGCACGAGAAGACCGCCGTTTCCGGCCTGATCGAAGAGCTGT ACACCTTCCTGCGCCAGGCTGACGCCCGCGAACTGGACCTGCTGTTCACCGCCCTGGACGCCGCCCGCGCTGCTGGCGACAAGGCCAAGCAGGACGAAAT CCAGGCTCAGATCGACAACTACGAAACTCACGTAGTACCGATCATCGCCGACATCGACGCCGGTTTCGGCAACGCCGAAGCGACCTACCTGCTGGCCAAG AAAATGATCGAAGCCGGTGCCTGCTGCATCCAGATCGAGAACCAGGTTTCGGACGAGAAGCAGTGCGGCCACCAGGACGGTAAAGTGACCGTTCCGCACG AAGACTTCCTCGCCAAGATCAACGCTGTTCGCTACGCCTTCCTCGAGCTGGGCGTTGACGATGGCGTGATCGTTGCCCGTACCGACTCCCTGGGCGCCGG CCTGACCAAGCAGATCGCCGTTACCCGCCAGCCGGGCGACCTGGGCGACCTGTACAACTCCTTCCTGGACTGCGACGAAATCAGCGCGGCCGAACTGCAG AACGGCGACGTGGTGATCAACCGCGGCGGCAAGCTGCTGCGTCCGAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGACCGTT GCGTCCTGGACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAGGGCATGGTTGACCG CATCCGCGAAGTCATCCCGAACGCCAAGCTGGTGTACAACAACAGCCCGTCGTTCAACTGGACCCTGAACTTCCGTCAGCAAGTGTTCGATGCATTCGTT GCCGAAGGCAAAGACGTCTCCGCCTACGACCGCGCCAAGCTGATGAGCGTCGAGTACGACGAGACCGAACTGGCCCAGATCGCCGACGAGAAGATCCGCA CCTTCCAGCGCGACGGTTCGGCTCACGCAGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCTCTGTCGACCGACAACCTGGCCAA AGGCTACTTCGCCGACCAGGGCATGCTGGCCTACGTGAAAGGCGTTCAGCGTCAGGAACTGCGTCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCGGACATCGGCGACAACCACAAAGAGTACTTCGCTGGCGAAGCCGCTCTGAAAGCCTCGGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACAGGTTCGACCGGCCCCTCGGGGCCGGGAGGCACCTCGCAGAACCCCGGCTTATGCCGGGGTTCTGCTTTTTGTGCAGCTATAAGAAGAGCTTGGC CGCCGCGCCAGACGCACCACCCTCCTCCGCCAAGGGCAACGCCAGCCATGCGTGCGAGCTTGATGCTCCCCACACGCGTAGAGGACGAACCATGCCCAAG CGCAATCGCCTGGCCCTTGCCGCCAGCCTCATCCAACGCCTACCCCACCCCATGCACGAACCGCTACTCAGCCGCCTGTTCGGATCCCAGGTGCATTTCG CCGGCACCGCTCAGGTGCGCATTCAGCGCATGTCCCAGCATGAAGTCCGAATGAGCCTGACCAATCGCCGACGCGTACAAAACCACATCAAGGGCATCCA CGCCGCCGCCATGGCATTGCTGGCCGAGTCGGCGAGCGGCTGCGTGGTTGGCATGAATCTTCCGGACGACAAACTACCCCTGATTCGAACGCTCAAGGTC
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNDIKAVAALKEKFGSSWSAINPESVARMRAQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARELDLLFTALDAARAAGDKAKQDEIQAQIDNYETHVVPIIADIDAGFGNAEATYLLAK KMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTRQPGDLGDLYNSFLDCDEISAAELQ NGDVVINRGGKLLRPKRLASNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKGMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQIADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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