Pseudomonas knackmussii B13, PKB_RS14180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCCATCCCGGTACAGCTGTTTAGGGCACAGCGCACCAAAAAGGAACCGCCATCATGGGGAACTTCGATTCAAGGATCGTCGGACTGCTCGTCGGCCTC GCATGTGTGGCCACGACGGCCACCATAGTCCCGGTAGCCAACGCCGGCGACGGCACCATCGTTCTGCAACGCGACGTGCAGCCCCGGGTCGCCACCCGGC CGACCATGGTGCCTGATCCAAACCCGACCACCGTCAATCCGAACGTCTCCCGCCAGGTCATTCAACAGACCAACGAGCTCAGCGATACCGATTTCGCAGG TGTCACCAGCGGTTCCAGCCTCCAGCAGCGCATCCTGCCCAACGGCCAGCTCGTGGGCATGGACAACGGCGCCAACCAGAGCCTGACGAACAACCCGCTC GGCGGCGGCGGTGGCGGTGGCGCGGGCATCTCCAACTCGGTCAACCGCACGGTCCAGCAAGGCCTGTCGCCGTTGCGCATGCTGACGGGGGATCGTTGAG
|
|
| DNA Sequence for Gene |
>PKB_RS14180
ATGAAAGCCCATCACGCACTTTCCCTGCTCCTGCTCAGCGCCTCGGCCGCCTTCGCCCAGGACCCGCAACTGGTCAACAACGCCAGCATCGACAACAGCG GCCGGGGCTACAACGGCGTAGCCAGCTTCAACCAGGCGGCAGGCGATGAAACGCAGCAGGCCAACGGCCGCGCCATTGCCATCGGCACCGAAGGCGGTGC CCGCACCCAGTTCAATCAGAAAGTGATCGCCATCGTCGACCCGACCCAGGCGGCGAAGGCTTCGATCACTGGCAATTCGTTCTCCAACGGCAACGGTGCA CTGGGCGTGAACCAGTCCGCCGGATCTGCCAACCAGCAGGTCAATGCCATGAGCATCAGCGTGAACGCGGTGCCGCAGAGCGTCGGTGACGACGTGCTCT CGCAGCAGAACGTGACGCTGTCACTGAACTCCGGTCCATCGGGTTCATCCACCGGCAGCCGGCAGATCGTCACCAGCGATCAGGCCTTTACCGGCAACCG CGGGGTGGTCCAGGTGAGCCAGAGCGCGGGGGTCGGCAATCGCATTGCCAACACCCTGACGATCCGGGTCGCAGACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCAATGCCAACAACCAAAAACACTAAGCACGCCAATATGCAAGGAGAATCACCATGAAACCGACTATGGCTCTCAAGCCTCTGGTTTTCGCGGTAGCAG CGGTCCTGGCTGTAGCTGTTCACGCGGACAACCGCAATGACAATCATGGTCACGGCCACGGTCATGGCCACGACCATGATAACCACCACCAACATCAGCC CTACGACCCCTACAAGGACCCACGGATTCCGGCTGGTGCAACCGCTACCGTGATTGACACCCAAGACAGCTACAACAACAACGTTACCAACATGGGCACC AAGAACAATGCCACTGTTGATAATTCGCTGAAGGGTGCATCGGGTAACGTCGGCGCTAACGTGGCCGCTGGCGACATGAACCAACAAGCCAACGCCGCCG CCCTCGCCACCGCAGATGAGCACTTCATCTTCGGTTCGGCAGAAGCGTCCACCGACGTGACCCAGAACAATCACAACAACAACGCTTGGAACTTCTCCAA
|
|
| Amino Acid Sequence |
>autotransporter adhesin
MKAHHALSLLLLSASAAFAQDPQLVNNASIDNSGRGYNGVASFNQAAGDETQQANGRAIAIGTEGGARTQFNQKVIAIVDPTQAAKASITGNSFSNGNGA LGVNQSAGSANQQVNAMSISVNAVPQSVGDDVLSQQNVTLSLNSGPSGSSTGSRQIVTSDQAFTGNRGVVQVSQSAGVGNRIANTLTIRVAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|