Pseudomonas knackmussii B13, PKB_RS10370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0018576 catechol 1,2-dioxygenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04444
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009712 catechol-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04444
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006725 cellular aromatic compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00775
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.60.130.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008199 ferric iron binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00775
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00775
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04444
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019614 catechol-containing compound catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03460
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pkc00364 Fluorobenzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc00623 Toluene degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc00361 Chlorocyclohexane and chlorobenzene degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.60.130.10 Aromatic compound dioxygenase IPR015889 Intradiol ring-cleavage dioxygenase, core 1 304 1.6E-105
PANTHER PTHR33711 DIOXYGENASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G02910)-RELATED - - 9 288 2.2E-58
Pfam PF04444 Catechol dioxygenase N terminus IPR007535 Catechol dioxygenase, N-terminal 28 94 1.7E-23
NCBIfam TIGR02439 JCVI: catechol 1,2-dioxygenase IPR012801 Catechol 1,2-dioxygenase, proteobacteria 8 274 0.0
SUPERFAMILY SSF49482 Aromatic compound dioxygenase IPR015889 Intradiol ring-cleavage dioxygenase, core 4 286 2.09E-91
Pfam PF00775 Dioxygenase IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal 105 284 2.0E-71
CDD cd03460 1,2-CTD IPR012801 Catechol 1,2-dioxygenase, proteobacteria 10 284 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.