Pseudomonas knackmussii B13, PKB_RS09810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015833 peptide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pkc02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 32 190 4.2E-27
PANTHER PTHR43776 TRANSPORT ATP-BINDING PROTEIN - - 278 535 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 280 529 2.48E-66
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 11 262 1.13E-69
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 308 458 9.0E-30
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 278 541 3.1E-82
CDD cd03257 ABC_NikE_OppD_transporters - - 280 512 2.50163E-108
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 40 240 2.5E-16
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 316 507 6.8E-18
CDD cd03257 ABC_NikE_OppD_transporters - - 11 245 6.56237E-115
Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal 509 533 1.5E-4
FunFam G3DSA:3.40.50.300:FF:000016 Oligopeptide ABC transporter ATP-binding component - - 277 542 1.3E-101
FunFam G3DSA:3.40.50.300:FF:000016 Oligopeptide ABC transporter ATP-binding component - - 8 274 1.0E-113
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 9 275 2.2E-84
Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal 242 271 5.4E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.