Pseudomonas knackmussii B13, PKB_RS08060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGACGACTCCTCCGTGGCCCGCAAGCAGCTGGTGCGCTGCCTGGAAACTGTCGGTGTCGAAGTGCTGGCGCTCAATGACGGCCGCCAGGCGCTGGACTAC CTTCAACAGATGCTGGATGCCGGCGGCAAGCCGGGCGAAGAACTGCTGATGGTGATTTCCGACATCGAAATGCCGGAGATGGACGGATACACGCTGACAG CAGAAATTCGCCATGATCCGCGACTGCAGGATTTGCATATTCTCCTGCATACTTCGTTGTCGGGGGTGTTCAACCAGGCGATGGTCAGGAAGGTCGGCGC CGACGATTTCCTGGCCAAGTTCCGTCCGGACGACCTGGCGGCACGAGTAGCCGAACGGATTCGCGCGTTCGACGCACGTTGACACGGGGAACACCCGCAA GGTGACCACGGGCGGCCCCAGTGCCGTCCAAGGCCGGGGTCGACTCCGGCCTGCACGGTGCCGCAGTGGGCATCGGGCCAACACAAAGGGGCGTTCATAG
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| DNA Sequence for Gene |
>PKB_RS08060
GTGACATCAACCAATCTGGAATTCGAGCTGTTCCGGGACTTCCTGGAAAAGACCTGTGGCATCGTGCTGGGTGCCAACAAGCAGTACCTGGTCGCCAGCC GTCTGAACAAGTTGATGGAACAGCAGGGCATCAAGACGCTCGGCGAATTGGTGCAGAAGATCCAGGGCCCGTCGCGCGGTCAATTGCGCGAGCTGGTCGT GGATGCCATGACCACCAACGAAACCCTCTGGTTTCGCGACACCTATCCCTTCGAGGTGCTGAAGAACCGCGTGCTGGCCGAGAGCATCAAGGCCAGTCCC GGACAGCGCCTGCGCATCTGGTCGGCGGCCTGTTCGTCGGGCCAGGAGCCCTACTCGCTGTCGATGACCATCGACGAGTTCGAGAAGACCAACCTCGGCC AGCTCAAGGCCGGCGTGCAGATCGTGGCGACCGACCTTTCCGGCTCCATGCTCAACGCTTGCCGCGCCGGCGAGTACGACAGCCTGGCGATCGGCCGCGG CCTGTCCCAGGAGCGCCTGCAGCGCTACTTCGACGCCAAGGGGCCGGGACGCTGGGCAGTGAAGCCGGCAATCAAGAGCCGCGTCGAGTTCCGCGCGCTG AACCTGCTGGACAGCTACGCGAGCCTCGGCAAGTTCGACCTGATCTTCTGCCGCAACGTGCTCATCTATTTCTCCGCCGAGATCAAGCGCGACATCCTGC TGCGCATGCACGCCGCGCTGAAGCCGGGCGGCTACCTGTTCCTCGGCGCCTCCGAAGCGCTCAACGGCCTGCCGGATCATTACCAGATGGTCCAGTGCAA CCCGGGGATCATCTACAAGGCCAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGTGGCCGGACCGGCGTTGCGGCCGGCCCGTGCATCTGGTGCAGGCCTATCGGTCTGTTGCCGATCCGATCTCTCCCTCTCCCCAACCCTCTCCCGCA AGCGGGAGAGGGGGCTGTCCGGCGTGTGCGGAAATCCCGGCGTCAGCCTGCAGGAGCGGATTCATCCGTGAACCGTACGGCACCGTGATCCCTGTAGGAG CGGCCCATGGCCGCGAATCGCGCGCATGGCGCGCTCCTACAGGTTCAAATTGGCGCGAGAATTTTCGCGGATGAATCCGCTCCTGCATGACCTGGAAGGG AAGCTCGATGCGCGACTGTAGGAGCGGACCTTGTCCGCGAAAATTCGCAGGCGCAGCCTCGCACTCGCGGAGATCACGGGAAGCTGCGAGCGGAGCTCGA ACACCCCGCCCAAAGGGCAGGGCGCCCTTGCCGCCGGGCGGAAATGCCTTGCCGCTTGCCGCGATTTGCCGCCTCTTGCCGCTCCCGATTTCATCTCAAT
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| Amino Acid Sequence |
>chemotaxis protein
MTSTNLEFELFRDFLEKTCGIVLGANKQYLVASRLNKLMEQQGIKTLGELVQKIQGPSRGQLRELVVDAMTTNETLWFRDTYPFEVLKNRVLAESIKASP GQRLRIWSAACSSGQEPYSLSMTIDEFEKTNLGQLKAGVQIVATDLSGSMLNACRAGEYDSLAIGRGLSQERLQRYFDAKGPGRWAVKPAIKSRVEFRAL NLLDSYASLGKFDLIFCRNVLIYFSAEIKRDILLRMHAALKPGGYLFLGASEALNGLPDHYQMVQCNPGIIYKAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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