Pseudomonas knackmussii B13, PKB_RS07025

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63892
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033856 pyridoxine 5'-phosphate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63892
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008615 pyridoxine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63892
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pkc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pkc00750 Vitamin B6 metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 247 6.1E-114
CDD cd00003 PNPsynthase IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 8 241 0.0
NCBIfam TIGR00559 JCVI: pyridoxine 5'-phosphate synthase IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 9 241 1.5E-93
SUPERFAMILY SSF63892 Pyridoxine 5'-phosphate synthase IPR036130 Pyridoxine 5'-phosphate synthase 7 242 5.36E-95
Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 1 247 125.91185
PANTHER PTHR30456 PYRIDOXINE 5'-PHOSPHATE SYNTHASE IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 7 244 4.8E-103
FunFam G3DSA:3.20.20.70:FF:000042 Pyridoxine 5'-phosphate synthase - - 4 246 1.1E-120
Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ 9 241 2.0E-100

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.