Pseudomonas knackmussii B13, PKB_RS06630

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01113
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003684 damaged DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF100879
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00817
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01113 DNA polymerase IV [dinB]. IPR022880 DNA polymerase IV 5 352 37.915649
FunFam G3DSA:3.40.1170.60:FF:000001 DNA polymerase IV - - 25 77 2.6E-25
Pfam PF11798 IMS family HHH motif IPR024728 DNA polymerase type-Y, HhH motif 170 201 5.6E-8
Pfam PF00817 impB/mucB/samB family IPR001126 UmuC domain 11 158 5.8E-50
SUPERFAMILY SSF100879 Lesion bypass DNA polymerase (Y-family), little finger domain IPR036775 DNA polymerase, Y-family, little finger domain superfamily 246 352 1.41E-23
FunFam G3DSA:1.10.150.20:FF:000019 DNA polymerase IV - - 171 232 2.0E-23
PANTHER PTHR11076 DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER - - 5 346 9.0E-99
FunFam G3DSA:3.30.70.270:FF:000002 DNA polymerase IV - - 71 169 1.1E-39
CDD cd03586 PolY_Pol_IV_kappa IPR022880 DNA polymerase IV 9 338 0.0
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 4 178 1.8E-40
Pfam PF11799 impB/mucB/samB family C-terminal domain IPR017961 DNA polymerase, Y-family, little finger domain 244 352 5.4E-10
Gene3D G3DSA:1.10.150.20 - - - 180 233 4.5E-19
SUPERFAMILY SSF56672 DNA/RNA polymerases IPR043502 DNA/RNA polymerase superfamily 5 238 3.29E-93
Gene3D G3DSA:3.40.1170.60 - - - 25 76 3.5E-22
Gene3D G3DSA:3.30.1490.100 - IPR036775 DNA polymerase, Y-family, little finger domain superfamily 245 353 7.1E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.