Pseudomonas knackmussii B13, PKB_RS02625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGTTAATATCCGCAACCCTTGAAAACCGCCGTCTCCCGTGCCTACTGCCAGGAGCGTGCAAATCCCCGGTAATCATTGATAGGTACGACCTGGATGCCC GCCGTCAAAGTTAAAGAGAACGAACCCTTCGACGTAGCCCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCAGGCGTACTGGCTGAAGTCCGTAGCCGCG AGTTCTACGAAAAGCCGACCGCTGAGCGCAAGCGCAAAGCCGCTGCCGCTGTTAAGCGTCATGCCAAGAAAGTGCAGCGCGAACAGCGCCGCCGCGAGCG TCTGTACTGAGTTTCACTACTCAGTCGCACGCGCTGCACATCGCCCGGCCCACTCGCCGGGCGAGTGCCTGACAAGCTACACCGCACTCCGATTCGCGCA GGCGAAGCTCGGAGTTTTTTGCTTTTCGCGCCACTGAAAACCAAGCCCCGCGCAGCCTCGCTGCACTATGCTTGGTCCACCCCGCGTATCGCGTGAGCCT
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| DNA Sequence for Gene |
>PKB_RS02625
ATGGCCGGCCTGATCCCGCAATCCTTCATCGACGACCTGCTCAACCGCACCGACATCCTCGATGTGGTGAGTTCGCGCATCCAGCTGAAGAAGACCGGCA AGAACTACAGCGCCTGCTGCCCGTTCCACAAGGAAAAGAGCCCCTCCTTCACCGTCAGTCCGGACAAGCAGTTCTACTACTGCTTCGGCTGCGGCGCCGG CGGCAACGCGCTCGGCTTCATCATGGACCACGACAGCCTGGACTTTCCCCAGGCCGTCGAGGAACTGGCCAAACGCGCCGGCATGGACGTGCCGCGAGAA GACGGTCGTCGCGGCAAGCCGCGCCAGCCGACCGACTCGCCACTCTACCCGCTACTCGCCGCCGCCGCCGACTACTACCGCCAGGCACTGAAGAGCCATC CGGCGCGCAAGGCCGCGGTGGAATACCTAAAAGGCCGCGGCCTGACCGGCGAGATCGCCCGCGACTTCGGCCTGGGCTTCGCACCACCCGGCTGGGACAA CCTGCTCAAGCATCTGGGTGGCGACAACCTGCAGCTCAAGGCCATGCTCGACGCCGGCCTGCTGGTGGAAAACCCCGACAGCGGCAAACGCTACGACCGC TTCCGCGACCGGGTAATTTTCCCCATTCGCGACAGCCGTGGGCGAGTGATCGCCTTCGGCGGCCGAGTCCTGGGCGACGACAAGCCGAAATACCTGAACT CCCCGGAAACCCCGGTCTTCCACAAAGGCCAGGAGCTCTACGGGCTGTTCGAGGCGCGCAAGAACAACCGCGACCTCGACGAGATCATGGTGGTCGAGGG CTACATGGACGTCATCGCCCTTGCCCAGCAAGGCATCCGCAATGCCGTGGCGACCCTTGGCACCGCAACCAGCGAAGAGCACATCAAGCGCCTCTTCCGA CTGGTCCCGAACATCCTGTTCTGCTTCGACGGCGACCAGGCCGGCCGCAACGCCGCCTGGCGCGCCCTGGAATCGGCACTGTCGAACCTGCAGGACGGGC GCAAAGTACGCTTCCTGTTTCTCCCCGAAGGCGAGGACCCGGACAGCCTGGTACGCGCCGAAGGCCCCGACGCCTTCCGCGCCCGCCTGGCGCAGCAAGC CCAACCGCTGGCCGACTACTTCTTCCAGCAACTGATGCGCGAAGCCGACCCCAGCACGCTGGAAGGCAAGGCACACCTGGCCACCCTGGCCAGCCCGCTG CTGGAGAAGATCCCCGGCAACACCCTGCGCCTGCTGATGCGCCAACGCCTGGGCGAAATCACCGGCCTAAGCGGCGAAGCGCTCAACCAGTTGAGCGCAC CGCGCAGCTCGGGCGGTAGCACCGCACCAAGTCATGCTGATAAGCACGCGCACGAATATGCCGATTACGACGTAGGACAATTCGCCGATCACGGCGACTC GCATTACCAGGACAGCGCCAGCTACTTCGAAGCGCCGAGCACTCCAAGTTTCTCGAAACAGGAGAAAAAGCCCTGGAAAGGCGAGCGCAAGTGGGAAGGT AAATGGGACGGCAAGAAAGGCGGCAAGCGCGGTGACTTCACCCCTCGCCAACCACGCACCGAGATAGGTGTCGAATCGCCAACCCTGACCGCCCTGCGGA CTTTACTGCATCATCCGCAACTGGCGCAGAAAGTCGAAGATGCCAGCCATTTCGCCGGAGAAGACCAGACTTACTCGCAACTGCTGGTCGCCCTGCTCGA GGCCCTGCAGAAGAATCCGAAGCAGCGTTCGATGCAGTTGATCGCCCGCTGGCACGGCACCGAACAGGGCCGCCTGCTGCGCGCCCTGGCGGAGAAGGAA TGGCTGATTTCCGCCGACAACCTTGAACAACAGTTTTTCGACACTATAACTAGGATGGCTGCCAGCCAACGCGAGCGCAGCCTTGAGCAACTGATCCGCA AGGATCGCGAAAGCGGACTCAGTTCAGAGGAAAAGGGGCGCCTCCTCGAACTCCTCACTCGCACCGCAATTCCCGTCGCCCCGACCTCATCTGGCGCTTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCATCTTTCAGCTATAATGGTCAGCTTGTTTTTTGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGCAATCTCGTCTT AAAGAGTTGATCAGCCGTGGTCGTGAGCAGGGTTACCTGACTTACGCGGAGGTCAACGACCACCTGCCGGAGGATATTTCCGATCCGGAACAGGTAGAAG ACATCATCCGCATGATCAATGACATGGGGATCAACGTATTCGAGACAGCCCCGGATGCGGATGCCCTGCTGCTGGCGGAAACCGATACCGACGAAGCCGC TGCCGAAGAGGCCGCTGCGGCCCTGGCTGCGGTAGAGAGCGATGTCGGCCGCACCACCGACCCGGTGCGCATGTACATGCGCGAAATGGGTACCGTGGAG CTGCTAACCCGCGAAGGCGAAATCGAAATCGCCAAACGCATCGAGGAAGGCATCCGCGAGGTGATGGGTGCCATCGCCCAGTTCCCTGGCGCGGTTGACA
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| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLLNRTDILDVVSSRIQLKKTGKNYSACCPFHKEKSPSFTVSPDKQFYYCFGCGAGGNALGFIMDHDSLDFPQAVEELAKRAGMDVPRE DGRRGKPRQPTDSPLYPLLAAAADYYRQALKSHPARKAAVEYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQLKAMLDAGLLVENPDSGKRYDR FRDRVIFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLFEARKNNRDLDEIMVVEGYMDVIALAQQGIRNAVATLGTATSEEHIKRLFR LVPNILFCFDGDQAGRNAAWRALESALSNLQDGRKVRFLFLPEGEDPDSLVRAEGPDAFRARLAQQAQPLADYFFQQLMREADPSTLEGKAHLATLASPL LEKIPGNTLRLLMRQRLGEITGLSGEALNQLSAPRSSGGSTAPSHADKHAHEYADYDVGQFADHGDSHYQDSASYFEAPSTPSFSKQEKKPWKGERKWEG KWDGKKGGKRGDFTPRQPRTEIGVESPTLTALRTLLHHPQLAQKVEDASHFAGEDQTYSQLLVALLEALQKNPKQRSMQLIARWHGTEQGRLLRALAEKE WLISADNLEQQFFDTITRMAASQRERSLEQLIRKDRESGLSSEEKGRLLELLTRTAIPVAPTSSGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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