Pseudomonas knackmussii B13, PKB_RS02200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas knackmussii B13 complete genome. [Details]
DNA Sequence Upstream of Gene
CCGGCGACAACGCCGCCAAGGTCAAGCTGTTCCTCGAGGACGGCTCGGAATACCCGCTGGAAGGCAAACTGGAGTTCTCCGAAGTCTCGGTCGACCAGGG CACCGGCTCGGTGACCCTGCGCGCCGTGTTCCCCAACCCCAAGCATGATCTGCTGCCGGGCATGTTCGTCCACGCGCAGTTGCAGGAAGGGGTGAAGGAC CAGGCGATTCTCGCCCCGCAACAGGGCGTGACCCGCAGCCTGCGTGGCCTGCCTACCGCCCTGGTGCTGGGTGCCGACGACAAGGTCGAGCTGCGCGAGC TGAAGGCCGACCGCACTGTCGGCGCCTACTGGCTGGTCACCGATGGCCTGAAGCCGGGCGATCGCCTGATCACCGAAGGCCTGCAGTACGTACAACCAGG CGTCAAGGCCAAGCCGGTGCCGGCGAAGAACGTCGCCCCCGCACCAGAGGCCGGCAAGCCCGCCGCTTCGGGCAGCCAGGGTTAACCAAGGGGTTTCGCA
DNA Sequence for Gene
>PKB_RS02200
ATGTCGAAGTTTTTCATTGACCGGCCGATTTTCGCCTGGGTGATCGCCCTGGTGATCATGCTGGCGGGCGGGTTGTCGATCCTCAAACTGCCGGTGAACC AGTACCCGGCCATCGCCCCGCCGGCGATCGCGATCCAGGTGAGCTACCCGGGCGCTTCCGCGGAAACCGTGCAGGACACCGTGGTGCAGGTGATCGAGCA GCAGATGAACGGTCTCGACCATCTGCGCTACATCTCCTCGGAGAGCAACTCCGACGGCAGCATGACCATCACCGTGACCTTCGATCAGGGCACCAGCCCG GACATCGCGCAGGTCCAGGTGCAGAACAAGCTGCAGCTGGCCACGCCGCTGTTGCCGCAGGAAGTGCAGCAACAGGGCATCCGCGTGACCAAGGCGGTGA AGAACTTCCTGATGGTCGTCGGCGTCGTCTCCGAAGACGGCAGCATGACCCGGGAAGACCTGTCGAACTACATCGTCTCGAACATCCAGGACCCGCTGTC GCGTACGCCCGGCGTGGGCGACTTCCAGGTGTTCGGCGCGCAGTACGCCATGCGTATCTGGCTCGACCCGGCCAAGCTCAACAGCTTCCAGCTGATGCCC AGCGATGTGGTCACCGCCGTGCAGGCGCAGAACGTGCAGATATCCTCCGGCCAGTTGGGCGGCCTGCCCGCGGTCAAGGGGCAGCAGCTCAACGCCACCA TCATCGGCAAGACCCGCCTGCAGACCGCCGAGCAGTTCGGCAACATCTTCCTGAAGGTCGCCTCCGACGGCTCGCAGGTGCGCCTGAAGGATGTCGCCAC GGTCGAGCTGGGCGGCCAGGACTACAGCATCAACGCGCAGTTCAACGGCAAGCCGGCCTCGGGTATCGCGATCAAGCTGGCTACCGGCGCCAACGCGCTG GACACCGCCAAGGCGATCCGCGCCACCCTAGAACGCCTGAAGCCGTTCTTCCCCGAAGGCATGAAGGTCGTCTACCCGTACGACACCACGCCGGTGGTCT CGGCCTCCATCCACGAGGTACTCAAGACCCTGGGCGAAGCGATTCTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCCACCCTGAT CCCGACCATCGCCGTACCCGTGGTGCTGCTGGGTACCTTTGGTGTCCTGGCGGCATTCGGCTTCTCGATCAACACCCTGACCATGTTCGGCATGGTGCTG GCGATCGGTTTGCTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTCGAGCGGGTGATGGCCGAGGAAGGCCTGCCACCCCGCGAGGCGGCGCGCCGCT CCATGGGACAGATCCAGGGCGCCCTGGTGGGTATCGCCCTGGTGCTTTCCGCGGTGTTCCTGCCGATGGCCTTCTTCGGCGGCTCCACCGGTGTGATCTA CCGGCAGTTCTCCATTACCATCGTCTCGGCCATGGCCCTGTCGGTGCTGGTGGCGCTGGTCCTCACCCCGGCGCTGTGCGCGACCATGCTCAAGCCCATC GAGAAGGGCGACCACGGCGAGCACAAGCGCGGCTTCTTCGGCTGGTTCAACCGCAGCTTCATCGCCGCCACCTCGCGCTACGAGCGTGGCGTCACCTCGA TCCTCAAGCGCCGCGCACCCTACCTGCTGGTGTACGTGGTGATCGTGATCGGTATGGGCTGGCTGTTCAGCCGCATTCCCACCTCGTTCCTGCCGGACGA GGACCAGGGCGTGCTCTTCGCCCAGGTGCAGACTCCGCCGGGCTCCACTGCCGAGCGCACGCAGAAGGTCGTCGACCAGATGCGCGAGTACCTGCTCGAC AAGGAAAGCGCCGCGGTCAACTCGGTGTTCACCGTCACCGGCTTCAACTTCGCCGGTCGCGGCCAGAGCTCGGGCATGGCGTTCATCATGATGCGGCCCT GGGAAGAGCGCCTGGGCGAGCAGAACAGCGTGTTCGCCGTGGCCCAGCGCGCCCAGCACTACTTCTTCACCATCAAGGACGCGATGGTCTTCGCCTTTGC CCCGCCGGCGGTGCTGGAACTGGGTAACGCCGTGGGCTTCGACATCTTCCTGCAGGACCAGGCAGGGGTAGGCCATGACACGCTGGTGCAGGCGCGCAAC AAGTTCCTCCAGCTTGCAGCGCACAACCCCGTGCTGCAGCGCGTGCGCCCCAACGGTCTGAACGACGAGCCGCAGTACGAGCTGCTGATCGACGACGAGA AGGCCAGCGCCCTCGGTGTGTCCCTGGCGGACATCAACAGCACCGTGTCCATTGCCTGGGGCTCGAAGTACGTCAACGACTTCATCGACCGTGGTCGGGT GAAGAAGGTCTATGCCCAGGGCGAACCGAATGCGCGGATGAGTCCCGAGGACCTGGCCAAGTGGTACGTGCGCAACAGCAGTGGCGACATGGTGCCGTTC ACCGCGTTCGCCACCGGCAAGTGGGTGTACGGATCGCCGAAGCTGGCGCGCTACAACGGCGTACCGGCCATGGAGATTCTCGGTGAGCCGGCCCCGGGCC GCAGCACCGGTGATGCCATGGCGGCGGTCGAGGAAATCGTCAGCCAGCTGCCGGCGGGTGTGGGTTACTCCTGGACCGGCCTGTCCTTCGAGGAACGCCT CGCGGGCTCGCAGACCACCGGGTTGTTCGTGCTCTCGACCATCGTGGTGTTCCTCTGCCTGGCGGCGCTCTACGAGAGCTGGTCGATCCCGTTCTCGGTA CTGCTGGTGGTGCCGTTGGGGATCATCGGTGCGTTGCTCGCCACCTCGATGCGCGGGCTCTCCAACGACGTGTTCTTCAAGGTCGGTCTGTTGACCACCA TCGGCTTTTCGGCGAAGAACGCCATCTTGATCGTGGAGTTCGCCAAGGAGCTGCACGAGCGGGAAGGCAAGCACATTGTCGATGCGGCCATCGAGGCCTG CCGCATGCGTCTGCGCCCGATCGTCATGACCTCGCTGGCCTTCGTCCTCGGCGTTGTGCCGCTGGCGATTTCCTCCGGCGCCGGCTCCGGTAGCCAGCAC GCCATCGGTACCGGCGTGATCGGCGGGATGATCACCGCGACCGTGCTGGCGATCTTCTGGGTGCCGTTGTTCTACGTGGTGGTCAGCACCCTGTTCAAGG ACAAGACGTCCAAGGAACAGGCGGCCGCCGAGAAGGGGCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TATGAGAAAGTCCTTACTCTCCCTGGCCCTGGCGGCTGCCGCACTGTCCGGCTGCTCGCTGATTCCGGACTACCAGCGCCCCGAGGCGCCGGTAGCCCAG GCCTATCCCCAGGGCCCGGCTTATGCCGGCGCCCAGGGCGTTGTCGGTGGCACTCCCGCCGCGGACCTGAACTGGCAGAGTTTCTTCAACGACCCGCAAC TGCGTCGTCTGATCGACGTGGCGCTGGAAAACAACCGCGACCTGCGCGTCGCCGCGCTGAACCTCGAGGCCTTCCAGGCGCAGTACCGCATCCAGCGCGC CCAGCTGTACCCGGCGGTCAGCGCCGACGTCGCCGGTTCGCGCCAGCGCCTGCCGGCCAAGGTGTCGTCCACCGGCAACGAGATGATCAGCAGCCAGTAC GGCGCGACCCTGGGCGTCACCGCCTGGGAGATCGACCTGTTCGGCCGCCTGCGCAGCCTGCGTGACCAGGCCCTGGAGCAGTATCTGGCCAGCGACGAAG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLAGGLSILKLPVNQYPAIAPPAIAIQVSYPGASAETVQDTVVQVIEQQMNGLDHLRYISSESNSDGSMTITVTFDQGTSP DIAQVQVQNKLQLATPLLPQEVQQQGIRVTKAVKNFLMVVGVVSEDGSMTREDLSNYIVSNIQDPLSRTPGVGDFQVFGAQYAMRIWLDPAKLNSFQLMP SDVVTAVQAQNVQISSGQLGGLPAVKGQQLNATIIGKTRLQTAEQFGNIFLKVASDGSQVRLKDVATVELGGQDYSINAQFNGKPASGIAIKLATGANAL DTAKAIRATLERLKPFFPEGMKVVYPYDTTPVVSASIHEVLKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMAEEGLPPREAARRSMGQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVLVALVLTPALCATMLKPI EKGDHGEHKRGFFGWFNRSFIAATSRYERGVTSILKRRAPYLLVYVVIVIGMGWLFSRIPTSFLPDEDQGVLFAQVQTPPGSTAERTQKVVDQMREYLLD KESAAVNSVFTVTGFNFAGRGQSSGMAFIMMRPWEERLGEQNSVFAVAQRAQHYFFTIKDAMVFAFAPPAVLELGNAVGFDIFLQDQAGVGHDTLVQARN KFLQLAAHNPVLQRVRPNGLNDEPQYELLIDDEKASALGVSLADINSTVSIAWGSKYVNDFIDRGRVKKVYAQGEPNARMSPEDLAKWYVRNSSGDMVPF TAFATGKWVYGSPKLARYNGVPAMEILGEPAPGRSTGDAMAAVEEIVSQLPAGVGYSWTGLSFEERLAGSQTTGLFVLSTIVVFLCLAALYESWSIPFSV LLVVPLGIIGALLATSMRGLSNDVFFKVGLLTTIGFSAKNAILIVEFAKELHEREGKHIVDAAIEACRMRLRPIVMTSLAFVLGVVPLAISSGAGSGSQH AIGTGVIGGMITATVLAIFWVPLFYVVVSTLFKDKTSKEQAAAEKGH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site