Pseudomonas knackmussii B13, PKB_RS01055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAGACCAAGGAGAAGATCTCGGTTTACAGCTACGAGTTGCTCGCTTACCGCGCGCATGTCGACGCCAAGGCCGTGCCCGATGCCGAGAGCGAGCGCCATC GCCTGCCGGACTACTTCATCACCGCCGACGACGTCAGCCCGCAGCAGCACGTGGACATCCAGGCCGCGGCGCAGAAGTGGGTCGATTCGTCGATCTCGAA GACCGCCAACGTGCCCACCGACTACCCCTTCGAGCAGTTCAAGGACATCTACCTGTACGCCTGGCGCCAGGGCCTGAAGGGCTGCACGACCTTCCGCTTC AACCCGGCGGCCTTCCAGGGCGTGCTGGTCAAGGACGCGGACCTGGAGCGCACGCTCTACCGCTTCCAGCTGGAAGACGGCAGCACGGTGGAGCTCAAGG GCAACGAGGAAGTCGAGTACGACGGTGAGATCCACACCGCCGCCAACCTGTTCGATGCCTTGAAAGAAGGCTACTACGGCAAGTTCTGAGGAGGCCCGCG
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| DNA Sequence for Gene |
>PKB_RS01055
ATGGCAGTGAAGATCGGTCAGAAGATCAAGGGCTTCGAAGTGGTGGACGTGGTCGAGGAGCGCGCCCGCGCCGAGGCCGCCGCCGCGGCGTCGGTGGTGA AGATGGACGAGACCCTGCAGCGTCCGGAGATGCTGGTGGGGGCGACCTACAAGATCAAGTCGCCGCTGTTCGAGCACGCGCTCTACGTGACCATAAACGA CGTGGTGCTCAACCCCGACACGCCCTACGAGCAGCGCCGGCCCTTCGAGATCTTCATCAACTCGAAGAACATGGACCACTTCCAGTGGATAGTGGCGCTC ACCCGCATCATGTCGGCAGTGTTCCGCAAGGGCGGCGACTGCACATTCATGGTCGAGGAAATGAAGGCAGTGTTCGACCCGCGCGGCGGCTACCTCAAGC GCGGCGGCGTCTATATGCCGTCGATCGTGGCTGAAATAGGCGCGGTGATCGAGCGCCACCTGATCGCCATCGGCCTGATGCAAGGCCCGGAAATCGACCA GGAACAACGCCTGTACCTCGCGGAAAAACGCGCGGCCTACGAAGCAGCCCAGGGCACCAACAAGGCCGAACCCGGCGAAGGCTTCCCCACCGGCGCCCAG CTATGCGGCAAGTGCAGCACGATGGCGGTAGTGCAAATGGACGGCTGCGCGACCTGCCTCAATTGCGGGCATTCGAAATGTGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGCCGTACGCGACGCATGCGTCGCGCCGGCGAACGACCGGCCATGGATGGCCGGGCTGGGGTTGAGCTTGAGCAGAGGAGTCACGACAGGGATGTCA GCTCCAGATTGGATCTTCACGCCCGCTTGCATCCCGCCACACAAAACCCTGTAGGAGCGAGCTTGCTCGCGAACCGAACTGCACTGCAGCAGCGGGGAAA TCCATTCGCGAGCAAGCTCGCTCCTACGAAAGGCGGGTCTCGCCGGTGAGTACCGTTACAACGCAAACGGCAGATGAATCTCCACCTTCTGCCGATGCGC CAGGCGACGTTCGAACTCGCCCGGATCGTGGATCAGCACATCCTGCCCGGCGAAGGCTTCGGCGGCGATCAGGCGGGAAAGCCAGAAGCGCACGCAGGCC ACGCGCAGCATTTCCGGCCATAGCTCCGCTTCCAGCGCGGTAAAGGGGCGGCGGCTGGCGTAGGCGCCTAGCAGGGCGCGGGCGCGCGGGCCGTCGAGGG
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| Amino Acid Sequence |
>NrdJb
MAVKIGQKIKGFEVVDVVEERARAEAAAAASVVKMDETLQRPEMLVGATYKIKSPLFEHALYVTINDVVLNPDTPYEQRRPFEIFINSKNMDHFQWIVAL TRIMSAVFRKGGDCTFMVEEMKAVFDPRGGYLKRGGVYMPSIVAEIGAVIERHLIAIGLMQGPEIDQEQRLYLAEKRAAYEAAQGTNKAEPGEGFPTGAQ LCGKCSTMAVVQMDGCATCLNCGHSKCG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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