Pseudomonas knackmussii B13, PKB_RS00790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGCGGTGCGCCAGGCCGTGGAAGGTGCCGACCCACATGCCGGCCGGGCTTATGCCCAGCAGCTGCTCGATGCGCGCGCGCATCTCCGCCGCGGCCTTG TTGGTGAAGGTCACCGCCAGGATGCTGTGCGGCGAGGCGTGCTCGACCTGGATCAGCCAGGCGATCCGATGCACCAGCACGCGGGTCTTGCCGGAGCCGG CACCAGCCAGCACGCGTTGCTGGCCGAGGGGCGCGGCGACGGCCTGGCGCTGGGGATCGTTGAGGGAGTTGAGCAGGAGGGAGAGGTCGTCATTCATGGT CGGGCATTCTACCGATGGCGGCGAAAGCCGGGCAAACTCAGGCGCCATTCGGTGACGCCCGACAAAAGTTCGGTAACTTGCTGGCAAAATGCTCATTTTT CGCCCTTGGGCGACCCCCGAGCCTCGGTTATGCTCCGCCGACGCTAGGCAGCACACTACAAGAATAATCGCCTATGACCGCATACCTAGACACGCCGGCG
|
|
| DNA Sequence for Gene |
>PKB_RS00790
GTGCCGTTCAGCCACACGGACATCCGCCAGCAATACGCCCGCGAGATCGCCATCGAGCGAACTCGGCTGCTGTACCAGGGCTCGCGCGTGCCGACCCTGC TCATGCTGCTCAACGGCCTGGCCCTGGCCGGACTGCTGTGGGACCGCCAAGGCGCGCTGCTGCTCAGCGGCTGGCTGGTCTGGCTGGTAGTGCTGGCTGT TCTGCGACTGATCCAGGTTTCCGCCTTCCATACCGCGAGCGAAGAACGCCAGGCCGATCCGCACTGGCTGCGCGCCTTCCTGTTCGGCGCCGGTGCCTCC GGCCTGACCTTGGCCTTCGCCGCCATCGTGCTTGTTCCGGCCGACGCCTTCCTGCAACAGGCGCTAGTCTTCGGCCTGATCGCCGCGGCGATCCTCTCCG CGAGCGTCGCCTACGCGGTGAGCCTGCCGGCCTTCCTGACCTTCTCCCTGCCATGCCTGTTGCCGGCCATCGGTTATCTGCTGCTGCGGGGAAATGGCTT GCAGCAGGGCTGGGGCTTGCTCGGGGTGATCCTGCTGTCGGCCCTGCTGGTGGTGGCCTGGCAGATCAACCGACTGGTCCAGGGCAGCCTGTTGCGGCGC TTCCAGACCCTGGCGCTGGTCGACCACCTGGAGCAGGCCAAGGGCCGCACCGAGCGGCTCAACGCCGACCTGGGTCGCGAAGTCGAGCAACGCCGCAGCG CCGAGCGTGCCCTGCGCAGTGCGCGCGACCTGCTGCAAGCGCGGGTCGAGGCCGGCACCCTCGAGCTGAGCGACAGCCAGGCGCGCCTGGCCCTGGCGCT GGAAGCCAGCGAGTTGGGCCTGTGGGACTGGAACCTGGAAACCGACGAGGTGCACCACTCGCGCCTGGAAGAAATCTTCGGGATCAGCCAGGACGAGGTG CGCAGCGTGCGCGCCGACCTGCGTCCGCGCCTGCATCCGGACGACGTGCCGCTGCTGCGCCGGGCCCTGGTCAACCACCTCAAGGGCCGCAGCGACGGCT ATTGCATCGAGTACCGGGTGCGCCATGCCGACGGCCACTGGGTCTGGGTCGAGGACCGTGGCCGGGTCATGCAGCGCGATGCCCGCGGCAAGGTCACGCG GATGGTCGGCACCCGCTGCGACATCAGCGCGCGCAAGCGTCGCGAAGAAGAGCAGCGGCTGGCGGCAACCGTGTTCGAGGCGGCCAGCGAGGGCATCGTC ATCCTCGATCCGGAATACCGCCTGCTGGCGGTCAACCAGGCGTTCAGCCGGGTCACCGGGCACCGAGCGGAAGACGTCATCGGCAAATTCGCGGCGCGCC TCTCAGGCAATACCGATACCCTGCGCCAGTACCTGCAGATCCGCGAGGAGCTGGAAGAGGTCGGCAGCTGGCAGGGCGAGCTGCTGGAAACCCGCAAGAA CGGCGAGATCTACCCGCAGTGGCTGCAACTCAACGTGGTGCGCGACAACCGCGGCCAGGTGGCGCATGTGGTGGGCTTCTTCGCCGATCTCACGGCGCGC CGCGACGCCGAGGAACGCCTGCGCTACCTGTCGCACTACGACGAACTGACCGGGCTGGCCAATCGCGGGCTGTTCAAGCAGCGCCTGCACGATGCCGGGC AACGCGCGCGGCAGAACGGCCGCAGCCTGGCCCTGCTGCTGATCGACATGGACCGCTTCAAGCTGCTCAACGACAGCCTCGGCCACGAGGTCGGCGACCA GTTGCTGCGCCAGATCGCCCGGCGCCTGACGCAGACGGTGCCCGAAGCCGATACCATCGCCCGGCTGTCCGCCGACGAATTCGCCGTGCTGATCGACTCC TACTCCAGCCTCTCGGCGCTGGCGCGGCTGTCCAGTCGCCTGCTGACCAGCCTGCGCATGCCGATGAGCGCGGGCGGCCAGGAGCTGGTGGTCAGCGCCT CGCTGGGTATCAGCCTGCTGCCGGAGAACGCGCGGGAGATTTCCGCGCTGATGAGCCAGGCGAACATGGCCATGCAGCATTCCAAGCACCTGGGCGGCAA CACCTTCCAGTTCTTCACCGACAACCTGCAGGCGAGCACCGTGGAGCGCCTGCAGATGGAAGTGCAGCTGCGCAAGGCGATCGAGGAAGGGCAGCTCGAG GTGTACTACCAGCCCAAGCTGAACCTGGCCAACGAGCGCCTGGACAGCGCCGAGGCGCTGGTGCGCTGGCGCCATCCGCAGCTGGGCATGGTGCCGCCGG GCGAGTTCATCGCCCTGGCCGAGGAAACCGGGTTGATCGGCGCCATCGGCGAGTTCGTCCTGCGCCGCGCCTGCCGCCAGCTGCGTGACTGGCAGGCGCA GGGAATGGGCGATCTGCGGGTATCGGTGAACCTTTCGGTGCACCAGCTTCGCCAGGGCAACCTGATCAGCCTGGTGCGTACCGTGCTCGACGAAACCGGC CTGGCCCCGCAGTGGCTGGAGCTGGAGCTGACCGAAAGCCAGCTGCTGGAAAACGTCGAGAGCGTCTGCGCGACCTTCCGCCAGCTGCGCGAGATGGGCG TGAAGCTGGCCATCGACGACTTCGGCACCGGCTATTCCTCGCTCAGCTACCTCAAGCGCTTCCCGGTGGACTACGTGAAGATCGACCAGACCTTCATCCG CGACCTTTCGGCGCAGGGCGAGGACGCGGCCATCACCCGCGCCATCATCGCCATGGTCCACAGCCTGGAGCTGAAGGTGGTGGCCGAGGGCGTGGAACGC CAGGAGCAGCTGGATTTCCTGCGCCAGCACCAGTGCGACGAGATCCAGGGCTACCTGATCAGCGTGCCGCTGGCGGCCAGCGCCTTTGCGGAATTTCTCC GG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCGTGCCGCTGGGCGACGTGCAGCACGCGCATTGAGCGGGCCTGGCGCGGTAAGATCCTGTCCTTTCGAGCTCGACCGACCCGCGCACCGCGCGGCCCC AGGACAAAGGATCTTGCATGCGCCCGTACGGATTGCCCCTCCTGGCACTGACGCTGAGTGTGCTCATCGCACAGCAGGCACAGGCCAGCAGCGACGACTC CTGCTACCCCAGCTGGAACCTCAAACGCGACACCCTGGACATCTGCAACAGCGTGCCCTTCCTCAGTCCGGGCAACGACAGCCGGGTCAACCTGCAACTG CTGCTGGCCGATGACGGCCGCGCCAGCCTGCCGCAACGCGCTCCAAGCGACGACGAGCAGCAGCTCGGCTATGGCCAGGTGCCGTTCCCGCTGAGCCGGC TGTTCGACGATGCCCCCGCCGCCGACGGCGCTGCCGATGCGGCCGTCGTGGCCAAGCCGGCCGCGCCGCTGGCTGAACTGGCCGCTCGCCTGGGCTTGCC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MPFSHTDIRQQYAREIAIERTRLLYQGSRVPTLLMLLNGLALAGLLWDRQGALLLSGWLVWLVVLAVLRLIQVSAFHTASEERQADPHWLRAFLFGAGAS GLTLAFAAIVLVPADAFLQQALVFGLIAAAILSASVAYAVSLPAFLTFSLPCLLPAIGYLLLRGNGLQQGWGLLGVILLSALLVVAWQINRLVQGSLLRR FQTLALVDHLEQAKGRTERLNADLGREVEQRRSAERALRSARDLLQARVEAGTLELSDSQARLALALEASELGLWDWNLETDEVHHSRLEEIFGISQDEV RSVRADLRPRLHPDDVPLLRRALVNHLKGRSDGYCIEYRVRHADGHWVWVEDRGRVMQRDARGKVTRMVGTRCDISARKRREEEQRLAATVFEAASEGIV ILDPEYRLLAVNQAFSRVTGHRAEDVIGKFAARLSGNTDTLRQYLQIREELEEVGSWQGELLETRKNGEIYPQWLQLNVVRDNRGQVAHVVGFFADLTAR RDAEERLRYLSHYDELTGLANRGLFKQRLHDAGQRARQNGRSLALLLIDMDRFKLLNDSLGHEVGDQLLRQIARRLTQTVPEADTIARLSADEFAVLIDS YSSLSALARLSSRLLTSLRMPMSAGGQELVVSASLGISLLPENAREISALMSQANMAMQHSKHLGGNTFQFFTDNLQASTVERLQMEVQLRKAIEEGQLE VYYQPKLNLANERLDSAEALVRWRHPQLGMVPPGEFIALAEETGLIGAIGEFVLRRACRQLRDWQAQGMGDLRVSVNLSVHQLRQGNLISLVRTVLDETG LAPQWLELELTESQLLENVESVCATFRQLREMGVKLAIDDFGTGYSSLSYLKRFPVDYVKIDQTFIRDLSAQGEDAAITRAIIAMVHSLELKVVAEGVER QEQLDFLRQHQCDEIQGYLISVPLAASAFAEFLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|