Pseudomonas knackmussii B13, PKB_RS00600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas knackmussii B13 complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCAAGGTCCTCGGCGAAGTCGACAAGGGCTGGGAAGTGGCCAACGCCTGGCTCACCGCCGGCCGCGTGATGGTCGCCGCCAACTGCGTCGGCCAGGCCCA GCGCGCGCTGGACCTGGCGCTGCAGTGGTCGGCCGACCGCAAGCAGTTCGGCCAGGCCATCGGCAGCTACCAGGGCATCTCCTTCAAGCTCGCCGACATG GCCACGCAGATCCGCGCCGCCGAGCTGATGACCCTGCACACCGCCTGGAAGATGGACCAGGGCAGCATGACCGACGGCGAGGCCGGCATGGCCAAGCTGT TCGCCAGCGAAGTGCTGGGCAAGGTCGCCGACGAAACCGTGCAGATCTTCGGCGGCATGGGCCTGATGGACGAAGGCCCGGTGGAACGCATCTGGCGTAA CGCGCGCATCGAGCGCATCTGGGAAGGCACCTCGGAAATCCAGCGCCACATCATTTCCCGCGAACTGCTGCGCCCGCTGCTGCGTTGATCGGTGATCGCC
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| DNA Sequence for Gene |
>PKB_RS00600
ATGAGCCAACGTGAAAACCTCAAGCGCCTGCTGGCCCCGAAGCACCTGGCCTTCATCGGCGGCCGCAGCATGGCGCGCGCGCTCAAGCGCTGCGCCGAAG GCGGCTTTGCCGGCCAGATGTGGCTGGTCAACCCGCAATACGACGAACTCGAAGGCGTGCCCTGCGTGCGCAGCATTGCCGAACTGCCGGAAGGCCCGGA CGCGGTGTTCGTCGCCACCAACCGCGACCTGACCCTGCAGGCCGTCGCCGAACTGGCCGCCAAGGGCGCCGGCGGCGCCATCTGCTACGCCTCCGGCTTC GCCGAGACCGGTGCCGAGGGCGAAGCCCTGCAGGCGCGCCTGCTCGAAGCGGCCGGCGACATGGCCCTGCTCGGCCCGAACTGCTACGGCCTGCTCGACT ACCTGCACGGGTCGGCCCTGTGGCCGGTGGCCCACGGCGGGCACATCGTCGAGAAGGGCGTGGCGGTGCTGACCCAGAGCGGCAACTTTGCCTACAACCT GTCGATGAGCGACCGCTCGCTGCCGATCGCCTACATGGCCTCGGTGGGCAACCAGGCGCAGCTGGGCGTTTCCGAACTGATGGACGTACTGCTCGACGAG CCGCGCGTCACCGCCATCGGCCTGCACCTGGAAGGGCTGAAGAACGTCCCCGGATTCGCCCGCGCAGCCCACAAGGCGCTGCAGAAGGGCATCCCGATCA TCGCCCTGAAGACCGGCGTGTCGCAGATCGGCGCGGAACTCGCGCTCAGCCACACCAGCTCGCTGGCCGGCTCCGACGCACTCTACGATGCGCTCTTCGA TCGCCTCGGCGTGATCCGTGTAAGCGGCCCGGTGAGCTTCATCGAAACCCTCAAGGCCGCCGCCTGCGGCAACCTGCCGGCCGGCCCGAGCCTGGCCGCG CTGGCCTGCTCCGGCGGCGACGCCGGGCTGATTGCCGACTACGCCGAACGCAACGGCCTGAGCCTGCCCAAGCTGGTCGAAGCGCAGCGCACCGAGCTGG CCCAGGTGCTGCCGGACTACGCCAACATCGCCAACCCGCTGGACTTCACCACCGCCATCTGGGGCGACGGTCCGGCGCTGGACAGGATGCTCGACAGCGC TCTGCAAACCGAAGCCGACGCCGCGCTGCTGGTGCTCGATTACCCGGGCGAAGAGACCGGCGAACGTCCGCAATGCGACCTGCTGCTGGAGCTGTACTGC GCGGCGCTGAAGCGCCACGACAAGGTCGGCTTCATCGCCTCGGCGCTGCCCGAACTGCTGCCAGCGCATGCCCGCGAACTGCTGCACGGCCACGGCGTCG CCGCACTGCAAGGCGTGGAAGACGGCCTCGCCGCCTGGGGCCGCATCGCCCACTACCGTCAGCGCCGCGAGGTGCTGCTGGCGCGTGGTGAAGCGGCGCT CGTGCCGTTGTGCCCGCAAGCGCTGGAAGGCCAGGGCCGCCTGCTCGACGAGTGGCAATCCAAGCAACTGCTGAAGCCCTTCGGCCTGCCGCTGCCGGCC GCCGTGCTGAGCACTCCTGGCCAGGCCCGCGAGGCTGCCGCCGACCTCGGCTATCCGCTGGTGCTCAAGGCGGTCAGCGCCGACCTGCCGCACAAGACCG AAGCCGGTGGCGTGGCGCTCAACCTGCGCAACGAGGCGGCCCTGGAAGCAGCGTTGTTCGACATGCGCGAGAACCTGGCGAAGCACGCGCCCAATGTGGC CTTCGACCAGGTCCTGCTGGAGCGCATGGCGAGCCCGCCGCTGGCCGAGCTGATCGTCGGCATCAAGCGCGAGGTTGGCTTCGGCCTGGCCCTGGTGCTG GGCGCCGGCGGCATTCTCGTCGAGCTGCTCAAGGACAGCCGCAGCCTGCTGCTGCCGACCACCGACGCGGCCATCCGCGACGCCCTGCACAGCCTGCGCA GCGCGCCGCTGCTCACCGGCTTCCGCGGTCGTCCGGCGGTGGACATGGACAAGCTGGTCGATGCCATCCGCGCGGTGGCCGACTTCGCCTGCGAGCACGC CGACAGCCTGGTGGAACTGGACGTCAACCCGCTGCTGGTGAACGCCGAAGGCGCGGTCGCGGTAGACGCCCTGGTTCGTACTGCCGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACATCCCCTGTAGGAGCGAGGGGGGCGCCTAGCCCTTGCTCGCGAACCCGACCCCGCTACGGGGCTGTTTGCGAGCAAGCTCGCTCCTGCGAAATAACG ATTCGAGGAGTGAACATGCAGAACAACAACACCCTCACCGGCGGCCAGGCCCTGGTCCGCCTGCTCGCCAACTACGGCGTCGACACCGTATTCGGCATCC CCGGCGTACACACCCTGGAGCTCTATCGCGGCCTGCCCGGCAGTGGCATCCGCCATGTGCTGACCCGCCACGAGCAGGGTGCCGGCTTCATGGCCGACGG CTACGCGCGCGTGAGCGGCAAGCCCGGCGTGGCCTTCATCATCACCGGTCCGGGCGTGACCAATGCCGCTACCGCCATCGGCCAGGCCTATGCCGACTCC ATCCCGATGCTGGTGATTTCCAGCGTCAACCACACCGCCAGCCTGGGCAAAGGCTGGGGCTGCCTGCACGAGACCCAGGACCAGCGCGCCATGACCGCGC
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| Amino Acid Sequence |
>acyl-CoA synthetase
MSQRENLKRLLAPKHLAFIGGRSMARALKRCAEGGFAGQMWLVNPQYDELEGVPCVRSIAELPEGPDAVFVATNRDLTLQAVAELAAKGAGGAICYASGF AETGAEGEALQARLLEAAGDMALLGPNCYGLLDYLHGSALWPVAHGGHIVEKGVAVLTQSGNFAYNLSMSDRSLPIAYMASVGNQAQLGVSELMDVLLDE PRVTAIGLHLEGLKNVPGFARAAHKALQKGIPIIALKTGVSQIGAELALSHTSSLAGSDALYDALFDRLGVIRVSGPVSFIETLKAAACGNLPAGPSLAA LACSGGDAGLIADYAERNGLSLPKLVEAQRTELAQVLPDYANIANPLDFTTAIWGDGPALDRMLDSALQTEADAALLVLDYPGEETGERPQCDLLLELYC AALKRHDKVGFIASALPELLPAHARELLHGHGVAALQGVEDGLAAWGRIAHYRQRREVLLARGEAALVPLCPQALEGQGRLLDEWQSKQLLKPFGLPLPA AVLSTPGQAREAAADLGYPLVLKAVSADLPHKTEAGGVALNLRNEAALEAALFDMRENLAKHAPNVAFDQVLLERMASPPLAELIVGIKREVGFGLALVL GAGGILVELLKDSRSLLLPTTDAAIRDALHSLRSAPLLTGFRGRPAVDMDKLVDAIRAVADFACEHADSLVELDVNPLLVNAEGAVAVDALVRTAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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