Pseudomonas kilonensis 1855-344, VP02_RS09900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0030170 | pyridoxal phosphate binding |
Inferred from Sequence Model
Term mapped from: InterPro:MF_02087
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.20.20.10 | Alanine racemase | IPR029066 | PLP-binding barrel | 1 | 228 | 1.7E-87 |
| Coils | Coil | Coil | - | - | 8 | 28 | - |
| FunFam | G3DSA:3.20.20.10:FF:000004 | Pyridoxal phosphate homeostasis protein | - | - | 1 | 222 | 1.8E-102 |
| CDD | cd06824 | PLPDE_III_Yggs_like | - | - | 3 | 222 | 0.0 |
| Pfam | PF01168 | Alanine racemase, N-terminal domain | IPR001608 | Alanine racemase, N-terminal | 19 | 223 | 8.8E-34 |
| SUPERFAMILY | SSF51419 | PLP-binding barrel | IPR029066 | PLP-binding barrel | 1 | 221 | 6.94E-79 |
| PIRSF | PIRSF004848 | YBL036c_PLPDEIII | IPR011078 | Pyridoxal phosphate homeostasis protein | 1 | 228 | 3.9E-71 |
| PANTHER | PTHR10146 | PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN | IPR011078 | Pyridoxal phosphate homeostasis protein | 3 | 227 | 2.4E-65 |
| Hamap | MF_02087 | Pyridoxal phosphate homeostasis protein. | IPR011078 | Pyridoxal phosphate homeostasis protein | 6 | 222 | 33.258774 |
| NCBIfam | TIGR00044 | JCVI: YggS family pyridoxal phosphate-dependent enzyme | IPR011078 | Pyridoxal phosphate homeostasis protein | 1 | 223 | 3.5E-76 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.