Pseudomonas kilonensis 1855-344, VP02_RS29650

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas kilonensis strain 1855-344 contig49, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGTCGGTCGACAGTCTCATTCCGGACGATGCCTTTCTGGAACTCGACCCGCTGAAAGCACTGGACCAACAGGAGCGGGTCTTGCTGGACATCGATGAGC TGATAAATCCCACTGCCGTACCACCAGACACCCTTGGGCGCCCAGATTATGCGCGTATCGACATGGAAAGCCTGCTGTTGCCGGAGTTGGTCGAAGAGCT CGTTGAACCAAGGCCTGCGCCCATCCCTCGTGCCAACGTTATGGATCACCCGCGCGAAGATTTTTGGGAGCGCTTCGCTATTGCCCTCGGCATGGATCTC GAAAGCCTTGATAGCGAGGCCCGCGAAACCCTGGCGATCAATGCAGCGCTGCTGCTCAAGCAAAGCATCCATGGTTTGCAGCAGAGCTTGCGTACCCGCT CGGAGTTGAAAGGCGAACCGCGCCTGACCCAGACCCAGGCCTATGAAGAACAGGTTCGTCTGATTGCCAGCCTGCAAATCGATCACCACGGATGACGTCC
DNA Sequence for Gene
>VP02_RS29650
ATGTCGCACTGCACGATGCACTTATTCAAGACTTTGACGGCGCTGGCCATGACCCTGCTGTTGGGCGGTTGCACCACGTTGTCGCCCTTTTCGACGATGA CCAAGCTCGACCTCGCCCTGACGGCCAGTGATCGGCTCAACCCCGATCTCAATGGGCGGCCATCGCCAGTGGTGGTACGGCTGTTCGAGCTCAGGCATCC GGTAGCCTTTGAAAACTCGGATTTTTTCAGCCTCTATGAGCGCGGGAGGGAGACATTGGCCCCCGATCTGGTTTCCAGCGAAGAGCTGGAACTGCGCCCA GGTGAGACCGTCGAGCTCAGGCTCGGTATCACTGGGGATGGCCGTTACGTCGGCATACTCGCGGCGTACCGGGACCTGCCACACGCTCGCTGGCGCTACA CACTGCCAGTGGCTGCGACGCAGTTGACCGAAGCGAACCTGACCCTCGACCAGGATGGGATCGCCAACACGCTTGAAAGACAGGCCAAGGTAGATGACCG ATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCACGATAAAGTCGTCTGGCAAGAAGGCATGTTGTTGCGTCCACAACATTTGCAACACAACGATCGTTATTTCGATCACCAGTTGAAGGTTCGTACCCG GTTGCTGGCCAGTTACGCCTGGGGATTCCTGGCGCTGGAAATCGATCTGCAATTTCTCAACATGGGCCAACTGGTGGTCAGCCAGGCCAGCGGGGTCCTG CCGGACGGCAGCCTGTTCGAGCTCGGTGGCAACACCGAGCCGTTGGCCCTGGAAGTACCGTCCAATACCAGCAATACACCGATCTACCTCGCGCTGCCAT TGGTGACCGGCAACCACATCGAGTCCCGTCGTCCGGAGCAATCTGATGTGCTGGCGCGCTACACCATCTACGACGCGCAGGTGACCGACTCCAACGCCGG CGATTCCGGCGGGAGCCAGATCAGTTGTGGCCGGCCGGACCTGCGCCTGCTGTTGGGCGAGCAACAGAGCGACCATGCGTTTGTGAAGCTCAAGCTCTGT
Amino Acid Sequence
>type VI secretion protein
MSHCTMHLFKTLTALAMTLLLGGCTTLSPFSTMTKLDLALTASDRLNPDLNGRPSPVVVRLFELRHPVAFENSDFFSLYERGRETLAPDLVSSEELELRP GETVELRLGITGDGRYVGILAAYRDLPHARWRYTLPVAATQLTEANLTLDQDGIANTLERQAKVDDR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site