Pseudomonas kilonensis 1855-344, VP02_RS27790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAACGTACCGAAGAACGCCGCCGTGGCGAAGGAAGAAACCTTCGGCCCGCTGGCGCCGCTGTTCCGTTTCAAAGACGAAGCCGAAGTGATCGCGATGTC CAACGACACCGAGTTCGGCCTGGCTTCGTACTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGTGGCCGAAGCCCTGGAGTACGGCATGGTCGGCGTC AACACCGGGTTGATTTCCAACGAAGTCGCGCCATTCGGCGGCATCAAGGCTTCGGGCCTGGGCCGTGAAGGCTCCAAGTACGGCATCGAGGATTACCTGG AAATCAAATACCTCTGCCTGGGTATCTGATCTGCTTCAAGCGCAAAGGGCACGAGAGCGCTGTCCCTTTGCGCGTTTCACCCGTTCTGTTTCTTGTGGCC GGAACGCTGCGGCAGTCGATCATCGCATGCTGTCGCAGTTGCCTCCCCGCCATGTATTCCTTGAGCCACGCCGACCGATGAGCGGCGAATGAGGACTGTA
|
|
| DNA Sequence for Gene |
>VP02_RS27790
ATGAGCAAGACTAACGCTGACTTGATGGCCCGCCGTACCGCCGCTGTTCCACGCGGTGTTGGCCAGATTCACCCGATCTTTGCCGAATCGGCGAAGAACG CCACGGTAACCGACGTTGAAGGTCGTGAATTCATCGACTTCGCCGGCGGCATCGCGGTGCTGAACACCGGTCACGTGCACCCGAAAATCATCGCCGCCGT GACCGCACAGTTGAACAAGCTGACCCACACCTGCTTCCAGGTCCTGGCCTACGAGCCGTACGTGGAACTGTGCGAAAAAATCAACGCCAAGGTGCCGGGT GATTTCGCCAAGAAAACCCTGCTGGTGACCACCGGTTCGGAAGCGGTGGAAAACGCCGTGAAAATCGCCCGCGCCGCCACGGGCCGTGCCGGTGTGATCG CGTTCACCGGCGCCTATCACGGTCGTACCATGATGACCTTGGGCCTGACCGGTAAAGTCGTGCCGTACTCGGCCGGCATGGGCTTGATGCCCGGCGGCAT CTTCCGCGCGCTGTACCCGAACGAACTGCACGGCGTGAGCATCGACGACTCCATCGCCAGCATCGAGCGTATCTTCAAGAACGACGCCGAGCCGCGTGAC ATCGCGGCAATCATCATCGAGCCGGTGCAGGGCGAGGGTGGTTTCTACGTAGCGCCGAAGGAATTCATGAAGCGCCTGCGCGCTTTGTGCGACCAGCACG GCATCCTGCTGATCGCTGACGAAGTGCAGACCGGCGCCGGCCGTACCGGCACTTTCTTCGCCATGGAACAGATGGGCGTTGCCGCCGACCTGACCACCTT CGCCAAGTCCATCGCTGGCGGCTTCCCGTTGGCCGGTGTGTGCGGCAAGGCCGAGTATATGGATGCCATCGCACCGGGTGGCCTGGGTGGCACCTACGCC GGTAGCCCGATCGCCTGTGCGGCGGCGCTGGCGGTGATGGAAGTGTTCGAAGAAGAACACCTGTTGGACCGCTGCAAGGCTGTGGGCGAGCGTCTGGTGA CCGGCCTGAAGGCGATCCAGAAGAAGTACCCGGTCATCGGTGAAGTGCGTGCCCTGGGCGCGATGATCGCCGTGGAGCTGTTCGAAAACGGCGACACCCA CAAGCCGAATGCGGCAGCGGTAGCCCAAGTCGTGGCCAAGGCGCGCGACAAGGGTCTGATCCTGCTGTCCTGCGGCACCTATGGCAACGTTCTGCGGGTG CTGGTGCCGCTGACCGCGCCGGACGAGCAACTGGACAAAGGCCTGGCGATCCTCGAAGAGTGCTTCTCCGAACTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCCTGGTTGTGCGCTGATCCACAAAAACCCGCCTTCTGGCGGGTTTTTTCATAATCGGCGAAGCTGCCTGTGGATTTTGAGCTGTCTGGAACGGCCACC AACGTCTAAGGTGCAAGTATGGCAAGGGAGCATGCTGCATGACTGCTGTGGATTTACCCGCTGTACCCCGTGTGTTGATCGCCGAGGCCGATCCGGCGTC CCGCGAGCTGCTTGAGCAGGTGTTGGCGGGTGTGCGCTGCGATGCTCGGGTGGACACCTGTGGCGACGGCAAGCAGGCTTTGGATTTGCTGGCGAAACAT CCCTACGACCTGGTAATCGCCGATTGGGAGCTGCCGGGGGTTGATGGCCTGGCGATTCTGCGTGGCCTTCGCCAGCAGCATCGCACGCCGCCGTTGCCGT TCATCCTGATGAGCCGGCGCAACGACAGCGCCAGCGTGCGTGAGGTCTTGCCGCTGGCACCGACCGCGTATCTGACCAAGCCCTTGAACCGGGAAAACCT
|
|
| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNADLMARRTAAVPRGVGQIHPIFAESAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTAQLNKLTHTCFQVLAYEPYVELCEKINAKVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALYPNELHGVSIDDSIASIERIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKEFMKRLRALCDQHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEHLLDRCKAVGERLVTGLKAIQKKYPVIGEVRALGAMIAVELFENGDTHKPNAAAVAQVVAKARDKGLILLSCGTYGNVLRV LVPLTAPDEQLDKGLAILEECFSEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|