Pseudomonas kilonensis 1855-344, VP02_RS26475
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCTGGTGTTGGGTGTGCTCTATGAAAGCTACATCCATCCGCTGACCATCCTGTCTACGTTGCCATCGGCCGGGGTCGGCGCGTTGCTGTCGATCTACG CGCTGGGTGGCGAGTTCAGCCTGATCTCGCTGTTGGGACTGTTCCTGCTGATCGGCGTGGTGAAGAAAAACGCCATCCTGATGATCGATCTGGCGCTGCA ACTGGAACGTGCCGGACAGACGCCACTGGAGTCGATCCGCAGCGCTTGCCTGCTGCGGTTGCGGCCGATCCTGATGACCACGCTGGCGGCGATCCTCGGC GCCTTGCCGCTGCTGCTCGGCGCCGCCGAAGGCTCGGAAATGCGCCAGCCGCTGGGCCTGACCATCATCGGTGGGTTGGTGTTCAGCCAGGTACTGACGC TCTACACCACCCCGGTGGTTTACCTTTATCTCGACAAGCTGCGCCATCGCTTCAATCGCTGGCGCGGTGTGCGCACTGATGCTGCCCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>VP02_RS26475
ATGACCGACCGTTCGCCTTTCAATCTTGCCGCAACGCTGGCGACCGCCCGTGGCTCGCGGGTGCTGAGCCTGGTGCTGTGCGTGGCGATGCTCAGTGCCT GTGCCGTCGGCCCGGATTATCAACGTCCCCAGGCTGCCGCCCCGGTGCAATACAAGGAGGCCCAGGGCTGGCGTCAGGCCAACCCTAGCGATGCGATGGC CAGGGGCGCCTGGTGGGAGCTGTACGGCGATGCGCAACTCAATGGCCTGGTGGACCAGCTCAATGCGTCCAACCAGACCGTGGCCCAGGCCGACGCCCAG TACCGGCAGGCCCGGGCGCTGGTGCGCAATGCTCGTGGCGCATTTTTCCCCACCGTGGACCTGACCGTTGGCAAGACCCGCTCCAGCCAGGGCACCGGCA GCAGCAGTTCGAGCCTGAGCAGTTCGTCCAGCGGCATTCGCGACACCTACAGCGCCCAGGCCGGCGTCAGTTGGGAGGCGGACGTGTGGGGCAAGCTGCG TCGCACCCTGGAAGCCGACGAGGCGAGCGCCCAAGCCAGTTTTGCCGACCTGGCGGCGATGCGCCTGAGCCAGCAATCGGAACTGGTGCAGAACTACTTG CAGTTGCGGGTGATCGATGAACAGAAGCGCCTGTTGCAGACCACCGTCGACAATTATCAGCGCTCCCTGAAAATGACCGAAAACCAGTACCGCGCCGGAG TGTCCGGCAGGGACGCGGTGGCCCAGGCGCAAAACCAGCTCAAGACTACCCAGGGCGACCTGATCGACCTGATCTGGCAGCGGGCCCAGTTTGAAAACGC CATCGCCGTGCTGATCGGCCTGCCGCCGGCCGAGTTCAACCTGGCCGAGACCCAGGACATCCCGTCGCTGCCGCAGATCCCGGTGGCATTGCCGTCGCAA CTGCTCGAACGCCGGCCGGATATCGCCTCGGCAGAGCGTTCGGTAATGGCCGCCAACGCCAACATCGGGGTCGCCAAGGCTGCGTATTACCCGGACCTGA CCCTGAGCCTCAGTGGCGGCTACAGCAGCAGTACCTACGACAACTGGGTGAGCGTCCCGAACCGCTTCTGGTCGGTAGGGCCACAACTGGCGATGACGCT GTTCGATGGCGGCCAGCGTTCGGCGGAAGTCGACCGTACCGTCGCGGCGTATGACCAGACCGTTGCCACCTATCGCCAGACGGTGCTCGACGGCTTGCGC GAGGTGGAAAACTACATGATCCAGCTCAAGGTGCTGGAAGACGAAGCCCGCGTGCGCCAGGAGGCCCTGGACGCCGCCCGGGAATCCTTGCGTCTGACGC AGAACCAGTACAAGGCCGGCTTGATTGCCTACCTCGACGTGATCACCGTCCAGGCCACGGCCTTGAGCAATGAGCGCAGTGTGCTGAGCCTGCAACAGAG CCGCTTGATCGCCAGCGTGCAGTTGATTGCCGCATTGGGTGGTGGTTGGGATGGGCAGTTGGAGGCGGACGAGAAACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACTGTTGATGGGTAAGTGGGAGCATGGCTTGCCCGCGATGAAGGCAATGCGGTCTTTCAGGGATCGAGTTGCCTTCATCGCGGGCAAGCCTTGCTCCC ACGGAGCTCCCCCTTTTCCATAAGAATTTCCTTGGTCACGTCGGCAGTCAGTCCCGCTTTTGGCCGATGCACTGCCTACGTCCTGTCGCGATGGCTTGTT ATAGTTCAAGCCTCTTTTCAGCCGGTAAAGGATCACTGCCATGTCGCAATACCAAGCGTTCAACGTCGAACTTGCAGACAACATTGCCCATGTGCAGATC AATCGCCCGGAAAAGATCAATTCGATGAACGCCGCGTTCTGGAGCGAGATCATCGAGATATTCCAATGGATCGACGATACCGATGCCGCACGGGTGGTGG TGCTCAGCGGTGCAGGCAAGCATTTTTCCTCGGGGATAGACCTGATGATGCTGGCGGGCGTGGCCAACGAGCTGGGCAAGGACGTAGGGCGCAATGCACG
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| Amino Acid Sequence |
>RND transporter
MTDRSPFNLAATLATARGSRVLSLVLCVAMLSACAVGPDYQRPQAAAPVQYKEAQGWRQANPSDAMARGAWWELYGDAQLNGLVDQLNASNQTVAQADAQ YRQARALVRNARGAFFPTVDLTVGKTRSSQGTGSSSSSLSSSSSGIRDTYSAQAGVSWEADVWGKLRRTLEADEASAQASFADLAAMRLSQQSELVQNYL QLRVIDEQKRLLQTTVDNYQRSLKMTENQYRAGVSGRDAVAQAQNQLKTTQGDLIDLIWQRAQFENAIAVLIGLPPAEFNLAETQDIPSLPQIPVALPSQ LLERRPDIASAERSVMAANANIGVAKAAYYPDLTLSLSGGYSSSTYDNWVSVPNRFWSVGPQLAMTLFDGGQRSAEVDRTVAAYDQTVATYRQTVLDGLR EVENYMIQLKVLEDEARVRQEALDAARESLRLTQNQYKAGLIAYLDVITVQATALSNERSVLSLQQSRLIASVQLIAALGGGWDGQLEADEKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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