Pseudomonas kilonensis 1855-344, VP02_RS24880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCGCACGTTTGTCGAGATCGACGGCAAGCGCCATGAGCTGGGCCTTCCGGCTGCGCTGCTGCGAGGCGTCAGCTTGAACGCAGCGGGTACCGCCAGCG AAAGCACGGCCCCATCCGAGGCCACTGATCCGCAGGCGGTACTGACGCCCGTGGCGGGTAATCTGCATACCTGGGTCGTCAAAGACGGCGAGTCGGTGAG CGCTGGGCAAGTGATCGCTGTGGTAGAAGCCATGAAAATGGAAACCTCGGTCCTCGCACCGTGTGAAGGCCAGGTGCAGATCGCCAAACAGGCAGGCGAC TACTTTGAAGCCGGCTCCGTCATTGGCCGCATCAAAACAGCTAACTGATTTAAAACTTTTCTTTTCGCAGTCAGTACGCGCAACGGGGTAATAACCCGGT TGCCGCGTGCTGCCCGCAGAAAACTGTAGATGTAACTTTGCAATCAAAACAACGATAAAACCCAACAAATAAATCTGCCGTTATCTGGAGCATAAAGAGC
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| DNA Sequence for Gene |
>VP02_RS24880
ATGTCAATCAATAAGGCTTTCGCTATTGCGGGTACTTGCGCGTTGATTTTCCCATTCACGGCATCTGCAGATTTTATTGCCGACAGTAAGGCCAGTATTG AACTGCGTAACTTCTACTTCAATCGTGACTTTCGCAACGGCCCTCCGACGGCCCAGCGGGACGCGGCAAAAGAATGGGCCCAGGGAGCCATGTTGCGGTT CGAGTCAGGCTATACCGCCGGCACCGTGGGCCTGGGCATCGACGCCGTTGGCATGCTCGGTCTCAAGCTTGACGGCGGTGATGGTTCCGGTGGCACGGGC CTGTTGCCGGCTGATCTCAGTTCGAAAAACGGCCGCGGCTCACAGGACGAATATTCCAAACTTGAGTTGACGGCCAAGGCGAAGGTGTCGGAAACGGTTC TAAAGGCTGGCTCACTCGCCTTCCGTACGCCCGTGGTATCGAGCAATGACACACGCCTGCTGCCCTCCACTTTCGAAGGCGCGCTACTGACCTCCAAAGA CATTGATAAGTTAGTCCTGCAAGGTGGCAAGCTGGAGCAAATCAAGTTCAACAGTTCCTCGGACTATCAGGACTTCACGGGCAACCGCATCGGCGGTGTC AGTGATGACTTCCGCTTTGCCGGTGGTACCTACAGTTTCAACAAAGCCCTTAGCACAAGTCTGTTCTACGGCAATCTGGAAAATGTCTACCGGCAGTTCT TTGGCGGTGTCGTCTATGAAATTCCCCTTGCCACGCAGCAGTCGCTGAAGTTCGATCTACGTTATTCGAAAAGTACCGATGACGGTAACTTCCGCCCGCT CGATAACCGCGCAGCGAACGGACTGGTCTCCTACACCCTGGGCGCCAACGTGTTCACCGCCGCCTATCAACACATGAGCGGTGACGATCCCTTCCCGTAC ATTGCCAATAGCGACCCGTACCTGGTCAACTTTGTCCAGATCAATGACTTTGCCAACACTCAGGAACGCTCCTGGCAGCTGCGTTATGACTACAACTTCG CGGCAATGGGCATTCCCGGGCTGACGTTCATGAGTCGCTATGTCCAGGGTGACAACGCGTTGGTCGGGGGCAGTAACACGGGCAAAGAGTGGGAGCGCGA TACGGATATCGGTTACGTGATCCAAAGCGGTTCGCTAAAAAACCTCGGGGTCAAACTCAGAAACGCTACGGTTCGTTCGAACTTCGGCAATGACCTGGAC GAAACTCGTCTGATCGTGAGTTACACATTGGCACTTTGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCTGACGGCGACCTTTGTCCCTGCGCAACCGATCCTTATTCAGAGAAAGTGCAATGAAAAGTCTCAGGTTTAACCAGAAGATACTACTGATTGCTTC GTTGCTTATCATGACGGTGTTTTGCACATTCACCGTATTGAATGATGTTCGGTTGCGTGACGACAACGTAAAAAAAATCGAGGAACACACCCGCGCCCTC TCGGCAGCGATGGCACATGATATCCAGAGCTGGCTGGACGGACGAATGATTCTGCTGAGGGGATTTGCCGAACTCATCGGCGACGATCCTTCGCCGCAAA ACATACTCGACAAATTGCAAAGCCAAGTGCTCATGAGCCAATTTATCGCGGGTTATGCGGGTACCCGTGACGGTGGGTTCCAGATCCATCCCCCGCGGCA GATGCCAGCCGATTACGACAGCAGGCAACGGCAATGGTACATAGACGCCGCAGACCATGGCGTGGCGATGACCGAACCCTACGTAGGGGCCGGGATCGAC
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| Amino Acid Sequence |
>porin
MSINKAFAIAGTCALIFPFTASADFIADSKASIELRNFYFNRDFRNGPPTAQRDAAKEWAQGAMLRFESGYTAGTVGLGIDAVGMLGLKLDGGDGSGGTG LLPADLSSKNGRGSQDEYSKLELTAKAKVSETVLKAGSLAFRTPVVSSNDTRLLPSTFEGALLTSKDIDKLVLQGGKLEQIKFNSSSDYQDFTGNRIGGV SDDFRFAGGTYSFNKALSTSLFYGNLENVYRQFFGGVVYEIPLATQQSLKFDLRYSKSTDDGNFRPLDNRAANGLVSYTLGANVFTAAYQHMSGDDPFPY IANSDPYLVNFVQINDFANTQERSWQLRYDYNFAAMGIPGLTFMSRYVQGDNALVGGSNTGKEWERDTDIGYVIQSGSLKNLGVKLRNATVRSNFGNDLD ETRLIVSYTLALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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