Pseudomonas kilonensis 1855-344, VP02_RS22345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTCGGCACAACGGGTCATCGACCTGGTCGAAATCCAGCGAGCCAACGGAATAGACGCCTCGCGGATTTTCCTCGCGGGTTTCTCCCAAGGCGGCGCGG TGGTCTATCACACGGCATTCGTGAAATGGCAGGGCCCGCTGGGCGGCGTGGTCGCGCTGTCTACTTATGCACCGACTTTCAGCGACGAGCTGCAATTGTC GGCCAGCCAGCAACGCATTCCGGTGCTGGCGCTGCACGGGCAATACGACGAAGTGGTACTCAACCCCATGGGCCGGACCGCGAAAGAGTATTTAAAGCAG CATGGTGTCACCGTGACATGGCAAGAATACCCAATGGGCCACGAAGTGTTACCCGAGGAGATTCGCGACATCGGCACCTGGCTGGCCGAGCGGTTGCGCT AAGAGGCTGATCGCCACGCCGGTCCTTTGACGATCACACTACGCCGCGCCCGTTTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATCGATGAG
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| DNA Sequence for Gene |
>VP02_RS22345
ATGACCGTGCTCAAAGCACTCAAGAAGATGTTCGGTAAAAGCGAGGCCGAGCAACTCGCGCCTGGCTCCACAGCGCCGACCCACGGCCCGAGCCATACCG ATGCGCAACAACCGCGCCGGGCGGCACCTGTTGCACAGGCAACAAAAGAACCCGTCGCCCAGCCTGTTACGGCCCCCGCGCCCGAGAAACCACGCAACGA AGCCCCCAAGCCACGCCGCGAGCGCGCACCGAAACCGCCGGTCGTCGCCTGGAAGCTCGAGGACTTCGTCGTAGCCCCCCAGGAAGGCAAGACCCGCTTC CACGACTTCAAGCTCGCCCCGGAACTGATGCATGCCATCCAGGACCTGGGTTTCCCGTATTGCACGCCGATCCAGGCGCAGGTGCTGGGCTTCACCCTCG CGGGCAAAGACGCCATCGGTCGCGCCCAGACCGGCACCGGCAAGACCGCCGCGTTTCTGATCTCCATCATCACCCAGTTGCTCCAGACCCCGCCGCCCAA GGAACGCTACATGGGCGAGCCACGGGCGCTGATCATCGCGCCGACCCGCGAGCTGGTGGTACAGATCGCCAAGGATGCCGCCGACCTGACCAAGTACACC GGCCTGAACGTCATGACGTTCGTGGGCGGCATGGACTTCGACAAGCAGCTCAAGCACCTCGAAGCCCGCCACTGCGACATCCTGGTCGCCACCCCAGGCC GCCTGCTGGACTTCAACCAGCGTGGCGACGTGCACCTGGACATGGTCGAAGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCC GCAAGTGCGCCAGATCATTCGCCAGACCCCACCGAAAAGCGAACGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGAAGACGTGATGAACCTGGCCAAG CAATGGACCACCGATCCGTCCATCGTCGAGATCGAAGCCGAGAACGTCGCCAGCGAAAACGTCGAGCAGCATATCTATGCCGTGGCCGGTGCCGACAAGT ACAAGCTGCTCTACAACCTGGTCAACGACAACGGTTGGGAACGGGTGATGGTGTTCGCCAACCGCAAGGATGAAGTGCGGCGTATCGAAGAACGCCTGGT GCGCGATGGCGTCAACGCGGCCCAGCTCTCGGGCGACGTGCCGCAGCACAAGCGCATCAAGACCCTCGAGGGTTTCCGTGAAGGCAAGATCCGCGTACTG GTCGCCACCGACGTGGCCGGTCGCGGCATCCACATCGACGGCATCAGCCACGTGATCAACTTCACCCTGCCGGAGGTGCCGGACGATTACGTGCACCGCA TCGGCCGTACCGGTCGTGCCGGTGCCGCGGGGGTTTCGATCAGCTTCGCCGGGGAGGACGACTCCTACCAGTTGCCGTCCATCGAGGCCTTGCTGGGGAA AAAGATCAATTGCGAAACTCCGCCGACGCATCTGTTGCGGCCGGTCGAGCGCAAGCGCCCTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATAGAGACGGACGCAGAGCGTCCATTGAGGCATTCCCACGCAGAGCGTGGGAACGATCAGCGCAGCCAAGACAGGCTGCGCTTTTTTTTGCCTTGGATA TTGCTCGATTAAACTAAAAGTCCATAATGGACAAATTAGTTTACAAGCAGCTTCCCGGAGCCCCCATGTCCAGCACGCCCTATGTGATGACCCAAGCCCA GGCCCGAGAACTGCTCGGGCAAATCGACGTACCGCAAATCCTGCGCAAGCTGTTCCGCGACCTCGCCGCGGGACAAGCGGTGCAGCCGCCCCAGCAACTG GTGGTGTTTCCCCAGGGCGCCGGGGACTTCATCAACTATCTGGGCGTGCTGGCTGAAGACCAGGTCTACGGGGTCAAGACCTCGCCCTATATAGTGCGCG AGCAAGGCCCGCTGGTGACCGCCTGGACCTTGCTGATGTCGATGCAGACCGGCCAGCCGCTGCTGTTGTGCGATTCCGCCGAATTGACCACCGCCCGCAC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MTVLKALKKMFGKSEAEQLAPGSTAPTHGPSHTDAQQPRRAAPVAQATKEPVAQPVTAPAPEKPRNEAPKPRRERAPKPPVVAWKLEDFVVAPQEGKTRF HDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYT GLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAK QWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVL VATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETPPTHLLRPVERKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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