Pseudomonas kilonensis 1855-344, VP02_RS21375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACTGGCGAACTGACTGATGCACCACTGGGCGCAATTGGGCGCCCACACGCCAAGGCGATCGCCGGTTTTCAAGCCTAGCGCCAGCAAGGCTCGGGCGT GCAGATCAACGGCCTCGGCCAGTTGTTGCCAGGTGTAACGCAGCGATTGATGGCGAACCACCAACGCCTCGCCCTCGGGATGGCGAGCCACGGTCTGGTC GAAAACTTCGCCGATGGTCTGGCCCAGCAAGGCCTTGTCCTCGGAACCACGGGTGTAGCTGAGCTGCGAATGCGAACCGGGTTGATCCATGACGCCCCCT CTTGTCTTTATTAGTGGGTGTAGCGGTGGAATCTCATGCACAGATGCTTTTGGTAAAGCTATTAAAGCGCACTTACTCTGGCCCAAGTTGACGTTAACGT AAAGGCCGATTGACAGCCTCTCGTCGCAGGCTTACGTTAACGTAAAGGTGAGAGCGATTCCGTCACTCTCCGCACCCGATAAAAAAGCCAAAGGTGTCCC
|
|
| DNA Sequence for Gene |
>VP02_RS21375
ATGAGCTACCCATCCCTGAACTTTGCCCTCGGCGAAACCATCGACATGTTGCGCGACCAGGTGCAGGCCTTCGTCAAGGCCGAACTGGCGCCGCGAGCAG CGCAGATCGATATCGACAACCTGTTTCCCGCCGACATGTGGCGCAAGTTCGGCGACATGGGCCTGCTGGGCATCACCGTACCGGAAGAATACGGCGGCGC TGGCCTGGGCTACCTGGCCCACGTGGTGGCGATGGAAGAAATCAGCCGCGGTTCGGCCTCGGTCGCCCTCTCCTACGGTGCCCACTCCAACCTCTGCGTG AACCAGATCAACCGCAACGGCAATCATGAACAGAAAACCAAATACCTGCCCAAGCTGATCAGCGGCGAACATATCGGTGCCCTGGCGATGAGCGAGCCGA ACGCCGGCTCCGACGTGGTCTCGATGAAACTGCGCGCCGACAAGCGTGGCGACAAGTACGTGCTCAATGGCAGCAAGACCTGGATCACCAACGGCCCCGA TGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGAAAAAGGTCCCCATGGCATCACCGCCTTCATCGTCGAACGTGACTGGAAAGGCTTCAGCCGC AGCAACAAATTCGACAAGCTCGGCATGCGCGGCTCCAACACCTGCGAGCTGTTTTTCGATGACGTCGAAGTGCCGGAAGAAAACATCCTCGGCACACTCA ACGGTGGCGTGAAAGTGCTGATGAGCGGCCTCGACTACGAGCGCGTCGTGCTCTCTGGCGGCCCAACCGGGATCATGCAGGCCTGCATGGACCTGATCGT GCCCTACATCCACGACCGCAAGCAGTTCGGCCAGAGCATTGGCGAATTCCAGCTGATCCAGGGCAAGGTCGCCGACATGTACACCCAGCTCAACGCCAGC CGCGCCTACCTGTATGCCGTGGCCCAAGCCTGCGAGCGCGGCGAAACCACCCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCCACGC AAATGGCCCTCGACGCGATCCAGATCCTCGGCGGCAATGGCTACATCAATGAATTCCCGGCCGGTCGTCTGCTGCGTGACGCCAAGCTGTACGAAATCGG TGCTGGCACCAGTGAGATTCGTCGGATGTTGATCGGCCGCGAACTGTTCAACGAAACCCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGAGCTGACCATGGCCACGCTGCACACTCAGCTCAACCCGCGCTCGCCGGAATTCATCGCCAACCGCGATGCGATGCTCGGACACGTCGAGGCCCTGCG CACCCTGCTCGCACAAATTCGCCAAGGCGGCGGTCCCAAGGCCCAGGAACGGCACACCTCGCGAGGCAAGTTGCTGCCCCGTGAACGCATCAACCGGCTG CTGGACCCGGGCTCGCCGTTTTTGGAAATCAGCCCATTGGCAGCCCACGAAGTCTATGGCGAAGACGTGCCGGCGGCCGGCGTGATTGCTGGCATCGGCC GCGTGGAAGGCGTCGAATGCATGATTGTCGCCAACGACGCGACGGTCAAAGGGGGCTCCTACTACCCGCTGACGGTGAAAAAACACCTGCGCGCCCAGAC CATCGCCCAGCAGAATCGCCTGCCCTGCATTTACCTGGTGGATTCCGGCGGCGCCAACCTGCCGCGCCAGGACGAGGTGTTCCCGGACCGCGAGCACTTC
|
|
| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQAFVKAELAPRAAQIDIDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKTKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGDKYVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGTLNGGVKVLMSGLDYERVVLSGGPTGIMQACMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|