Pseudomonas kilonensis 1855-344, VP02_RS20450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGCCCAGCCGTAGTCGGCCGGGTAAATGTCACTGGTCAAGCGCTCTTCGTAGCCGTGCAGTTGGTCGGGGCCGCAAAAGTGCATCTTGCCGGACAACG CCGTGCGATAGCCGAGGCGGCGCAGATAATGGGCGTAGGTCGGCACGTCCGCGGGAAAATCCGCCGCGTTGTCGTAGGCGCCGATCTTGCTCGGCAACTG GCCGCTCACCAAGGTGAAACGCGACGGCGCACAGAGCGGGCTGTTGCAATAGGCGGCGTCGAACACCACGCCCTCGGCGGCCAGGCGCGACAGGTTCGGC AGCTTGATCGGCGAAGGACCGTAGATCGGCAACATTGGCGCGGCCATTTGATCGGCCATGATGAAAAGAATGTTCTTGCGCTTCATGTATTCGCGGCATT CCATAGTAGGCAGTTATGCGATATTGCTGCGATTGAGCATGTAGCCCCCGGTTTTTTGGGTAAAGCCCATGCAGGATAATGACTAGGATAAGCACAGCTT
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| DNA Sequence for Gene |
>VP02_RS20450
ATGTATGACGCCCTGGGTAACCTGTCCCTGGAACTGTTCCGTGCCTTTGAAGCCGCGGCCCGCCAACAAAGCTTTACGGCGGCGGCGATTGAGCTGGGCA CCACGCAACCGGCCATCAGCCAGCAGATCAAGCGCCTGGAAGAGCAACTGGGTACGCGGTTGTTCGATCGCATCTATCGCGGCATCGAACTGACCGAGGC CGGGACGATCCTGTTCGAGCAGGTGCAGGCTGGCTTGCAGAGCATCGACGCCGGGCTGAGCGCGATCACCGCCCAGCATCAGCATGAGGTGCTGCAAGTG GCCACGGACTTCGCCTTCGCCGCCTACTGGCTGATGCCGCGCCTGCATCGTTTCCACGCGGCCAACCCGCAGGTGGACGTCAGCCTGGTGACCAGCGAAC GCAACCACAACATGCTGCGCACCGATATCGACGTTGCCGTGCTGTTCGGCGACGGTCGCTTCAAACAAGGCGAAAGTCGCTGGCTGTTCAGCGAAGAGGT TTTTCCGGTGTGCAGCCCGCTACTGCTCAAGGAACGTCCCCTGCCCTTGTCCGCCCAGGCCTTGGCGGAGTTTCCATTGCTGCACCTGCGCGCGGGCAAC AGCAACAGCTGGTTCGACTGGAGCGGCGTATTTCGCGAGCTGGGCATCACGTCACCACCGGCGCCCGGGCAGTTGCGCTTCGACAACTACACCTTGCTCA TCCAAGCGGCGATTGGCGGCCAGGGCGTTGCCATCGGCTGGCGTCACCTTGTGGATAACTTATTGGCCCAGGGCCTGCTGTGTCGTCCGATCGCTGAAAC GGTGCTGTCGCGGCTGGGGTATTACGTGGTCTTGCCCCAGCGTAAACGCCGTGGTGTGTTGATCCGGCAATTCGTCGACTGGCTGATGGAAGAACAGGCC AACAGCGGCGAATCGCTCACGGGGCTGCCGTTGCCGTCGATTGCTGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTATGTGGCCGTTTTTTTGGGGCTGCTTCGCTGCCCAGCGGGAGCAAGCTCCCTCGCCACGGGAATGTGTGTCCACAGCTAGTTGGCGGCGACAAAACTG ACGTGCTCGCCCACGTGCAGGTTCCGGCGCAGCTCATCGGCGATGCCGACCGCCACCCGGTTGAGCCGCTCCAGGGATTCGGCCATGCCGGGTTCGAGGC TGGTACTGACCGGGCTGAAATGTTCGATGCCCAGGCCAGGCGCGGCATAGGGGGCGTTGATCAAGGTCCATTGCAGGGTGCTGTTCTTCAGGGCATCGAG GACTTCTTCGGCGGCATGGCGCTGCAAGTCGTCGTCGGCCTGCTCTTCGTCGAGCATCGCAAAGTCGCCCACCAGAAACAGCCGGGGCACATTCACCGCC TGCATGCCGGCGATCAGTGCGTCCACGGCCAATACTTGCTCTACAGGGCCGGGAATCAGTGTGCGCTCCACTTGTTCGCTGTTCATCGGCAACCCCGGCG
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MYDALGNLSLELFRAFEAAARQQSFTAAAIELGTTQPAISQQIKRLEEQLGTRLFDRIYRGIELTEAGTILFEQVQAGLQSIDAGLSAITAQHQHEVLQV ATDFAFAAYWLMPRLHRFHAANPQVDVSLVTSERNHNMLRTDIDVAVLFGDGRFKQGESRWLFSEEVFPVCSPLLLKERPLPLSAQALAEFPLLHLRAGN SNSWFDWSGVFRELGITSPPAPGQLRFDNYTLLIQAAIGGQGVAIGWRHLVDNLLAQGLLCRPIAETVLSRLGYYVVLPQRKRRGVLIRQFVDWLMEEQA NSGESLTGLPLPSIAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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