Pseudomonas kilonensis 1855-344, VP02_RS15645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCGGATTTTTTTTGAGCCTGGCGCTCACCGGTTGCTCGCTTTTTGCGCCCAGTGTCGACCTGGACAGCCTGACCCTGGACGTCGCGCCGAGGGCCAAT GACGACACGCCGATCGCGGTGGATTTCATCGCGGTGAACGACCCGGACCTGCTCAAGCAGCTGTCGGGCATCACCGCCAGCCAGTGGTTCGCCGAGCGCG AACAGTTCCAGCGCGACTATCGTCAACTCATGTCGGTGTGGGGGCTGGAGCTGGTCCCAGGGCAATTCATCGACCGCCAACCCTTCCCGTTGGAGGGCCG GCGCGCCGCTGGACTTTTGGTCTTCGCCAGCTATAACACTCCCGGAGCCCACCGGCTTCGGCTGGACGATCAGCGCAAGGCCTGGCTGAAGTTCGACAGT CGCGAGATGACCCTCGTGAATGATGGGGCTCGCTGACAGCCAGCCTTGAGTGACCGCGGGCCGCCATGCGCGGCGACATTGGGATGTCGAAGGGAGTCGT
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| DNA Sequence for Gene |
>VP02_RS15645
ATGAGTCTGTTACCTGACGCGGTGTGCTGGCATGAGGGCATGCAATTGCTGCCCCAGCATTTTCAATTGCAAGGGCTGCGTGCCGAGGCGCTGGCCGCGT ATTTTGCCGGGGCCTGCAACCCTTGGTTCTGGGGCGTAAGCCAACTGGAAGTCGACCCTTCGGCCCTCAGCGCCGGCCAGGTGCGGCTGCTGCAACTGCA AGGCACCTTGCCGGACGGCTTGCCGGTCAACCTGCAGGCCGGCGTCGGGCCGACCTTGGAGCTGGACATCGGTGAGGCGATCGACAAGACCGACGACGCC ACTGTGACGGTGTACCTGGCCGTCAGCCCGCTGTGGCGCGCCGGGCAATTGGTGCCGCTCAAGGGGCGCCTGCAATCAGTGGTCGGCGAGGCGTTGCCAG ACCTCACCAGCGGTGCATTTCCCGAGTCGATCACCGTCTGGCGACCCAACCCGAGGCTGTGCACGCAACTGAGCAAGGCCGATTCGATCTGCCTGCCGCT GTTGCGCATACGCAAGGAGGGCGGTGGTTTCTGGCGTGTGCCCTACACCCCACCGACGCCGATCCTATTGCCGGAATCGGCCCTCGGTCGACGGGTCGCC GGGGTGTGCGCCCGGGCCCGGGAAAAATGCATGTTTCTCGCCGGTCGCTTGCGTCAGGCCCAGGCGGCTGGCAACCAGGACGATGCCATGGAGATCCGCC GGCAGTTGACCGCCTTGTGGGCGCGCTTGCCGGAAGTCGAAGGGGCGCTGAACACCCGGGTGGCCACGCCCCAGGCGCTCTACGGTTTGCTGCTGGGGCT GGCTGGAAGCTGGTCGGCCCTCGATCCGCTGGCGGGCGTCCCGGCCTTCGCGCCGCTTGACTTCCTCGAATTGCAGCGCGGCTATGAGCCGTTGCTCGAC TGGCTGGAAACCACCCTGGAACTGGTTCGCGCCGGCTATCGCAGCCTGGCCTTCGAGCGCGATGAGCAGGTCTTCTCGATCCAGTTGCCTGACGACGAGC CGGAGCAACGCCTGGTGATCGGCCTGCGCATGCCCAACGGCGCCAGTGAGCAGGCCGCGGCCGATTGGTTGCGCGGGGCGATCATCGCGTCGGCGCGGCA CATCCCGCTGCTCAGCCGACAACGCATGAGCGGTCTGCCCCACCAGGCCATGAGCCGCAACGAACAGGTGGCCTACAGCGTGGGCGAGGACACCCGTTTG TTTGTGGTGGCCGCCAGCGGGCAATGGTTCGACGCGCAATTGCCGCTGCACATCGTGGCGCCGGCATCGGCCCAGGCCAGCAGCCCGTGGCAAGTGGTGT TGTTCGTGGCGCAAGCCAGTGAAAGTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCAAAAGGGGAGTCGTATGCCTGATGGAAGTGGCGGGGCGGTTCGGAGTCTGCATGAGGCGCCGCTGAGCAGCGCTTTTCGCCAGGCCTGGCTGAAGT GGTCCCAGGAGTGGCAAGACTTGCCCAAGGACAGCGACCCTGCGGTATTGGTCAATCGGGTGGTGGAGTTCTCCGGGCGCAGCGCCCAGCGTCTGTGGCG GGTGGCCTTCGCCACCGTCGGCGATGCAGCGACCGAGCAGGTCAAGGCGCTGGTCTACGCCTTCGTGGCGCTGGTGGACGAAACCTTGCTGTTCAGCCCC TGGCCCGGACAACTGGCGTGGCAGCAGCACCCCCTCGAGTCACGCATGTATGCCAGCCGCCAGGCCGGCGAGCGCTTGCCGGCGGCGATCAAGAAACTGC TGGACGAGCAGATGCCTGGCACCCGGGACCTGGCGAATGTCTACCTGCAATGCCTGATCCTCGGGTTCCAGGGGCGATTGCGTGGCGAGCCGGGCCAGGT
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| Amino Acid Sequence |
>type VI secretion protein
MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALAAYFAGACNPWFWGVSQLEVDPSALSAGQVRLLQLQGTLPDGLPVNLQAGVGPTLELDIGEAIDKTDDA TVTVYLAVSPLWRAGQLVPLKGRLQSVVGEALPDLTSGAFPESITVWRPNPRLCTQLSKADSICLPLLRIRKEGGGFWRVPYTPPTPILLPESALGRRVA GVCARAREKCMFLAGRLRQAQAAGNQDDAMEIRRQLTALWARLPEVEGALNTRVATPQALYGLLLGLAGSWSALDPLAGVPAFAPLDFLELQRGYEPLLD WLETTLELVRAGYRSLAFERDEQVFSIQLPDDEPEQRLVIGLRMPNGASEQAAADWLRGAIIASARHIPLLSRQRMSGLPHQAMSRNEQVAYSVGEDTRL FVVAASGQWFDAQLPLHIVAPASAQASSPWQVVLFVAQASESA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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