Pseudomonas kilonensis 1855-344, VP02_RS15630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGAAGAACGCGGCGCCGACCAGGTGATCGCCTGGAGCCTGGACGCCGGCAACCAACAGATCAGCTACCCCGGCGGCGGCCAGCCGAACCTGCGCTGGA TGGTCGGCCAGCCCGTGCGCCTGACCTTGCGTTGGGCCCGCAACGGCTACCAGCGTCCGGCCAACGACCCGCTGCAACCGAACCTGGTGGTGCGCGACCT GGAGGCCGGCTGGGAGTACCAGGGGCCTTGGTCATTGCTGCGCCTGATGCGCTCGCAGGTGGCGAGTCAGCGCCAGCCGAATGTCGACTACACAGATTTC CCCCTGGCCTTGCAACTGCCGGTGACCGCCCAGACCCAGGCCCGCACGGCGCAGCAAACGTTGATGTTCATGCGTCTGTCGTTGATGAGCCAGGGCTCCA AGCTGCCCCTGTCGATCCCGCCGCTGCCGACGCGGGCGCCCCGTTCACCTTTCATGGCGACCGCATCGAGCCCCGCCATTGCCACTCGTGAGGAGGGCCT
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| DNA Sequence for Gene |
>VP02_RS15630
GTGAGCTTGCCGATATCGCCTTTGCCTGAGCTGGTCAGCCAGTTGCTCGAGCCGATCAGCGCCGAATCGCCCTGTGGCCCGGACCTGCGCTACGAACCGG AATATGACCAGTTGCGCGAATTGCGCCGGGAGGACGACACCAGCCTGCCCACCGGTGTGTGGCAGTCTTCGATCAAGCGCGCCCTGTGGCCAGACCTGGA ACGGCTCGCGACCACGTTGCTGCTTGAACGCAGCAAGGACCTGATGATCAGCGCCTGGCTGGGGGAGGCCTGGCTGCATATGGCTGGGCTGGAAGGGTTG CCGGGCAGCCTGGCGCTGGTGGCAGGGCTGTGTGAGCGCTATCCGGAGCAGTTGCACCCCCAGGCCGAGGAAGGCGACCAATCATGGCGGGTGATCCCCC TGGAGTGGTTGGCCCGTCGCTACAGCGAAGTGCTGCTGACGCGGGTGCCGTTGTTCGACGGCCGGGAACAGGCCTTCGCCGCTTTCTGCCTGGACGACTG GCAACGCTTGCAGCGCCAGCAAGTGTTGGTCAACGACAGCAAGAACGCCAAGGCCTCGGCCGAAGCGGCGCGCAACGATCAAAAGAAGCTCAGCGAACTG ATTCGCAACACACCCTTGTCGTTCTGGTTGCATCGCCAGGGCAGCCTGATGTTGAGCCTGCAACATCTGCAACGGCTCGAAGCCTGGAGCGACGCTTACC TGGGCAACCTGGCCCCGGGCTACAAATCCCTGCAGGACGTGATGCAGGCCTTGTTGGCACTGGTAGAGGAGTTCATCGCGATGCACCCACAGCAACCCAC CGTCGCGCCGGTGCAAACGTCCCCGGCGACCACGACGTCGACGTCCCAGCCGCAGACGGCACCTGCCCAGGTCTTCCAGGAACCGGCCAATCGTGAAGAG GCCTACCGACAGTTACTGGTCATCGCCGGTTACCTGGCCCGCACCGAACCCCACAGCCCGGTGCCCTACCTGATCCGACGCGGCGTGGAGTGGGGTAACA AGCCGTTGAGCGAGTTGCTGGGGGAACTGATCAGTGCCGATGCCGAATCCCGGCGCTTGTGGACGTTATTGGGCGTCCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCTCCTCGTCGGGCCACGGTACTGGCGTCAACACCGGTTTGCCGGAAAAGAACGCGGTCAGGTTCTGGCCCACCAGCTCTACCATTGCGCGGGTCGCTT CTGGCGACAGGCCGGCCACGTGGGGTGTGAGGACGACGTTGGGCAGGTTTTTCAGCGCCTGCGGCACCTCGGGCTCGTGATCGAACACATCCAGGGCCGC TCCGGCAATTCGCCGGTGCTCCAGGGCGCTGATCAGATCGGCGGTAGCAACCACGCTGGCCCTGGCGACGTTCACCAGAAATCCTTTGGGGCCGAGCGCA TCGAGGGTCTGCTTGTTGATCAATTGCCGGGTATCCAGGCCGCCTGGCGTGGCGACGATCAGGAAGTCCGAAACCCGCGCCAGTTCCGTGGGAGTGGCGC AGAAGGTGTAGGGCACGTCATTGCGCACCCGCCGATTGTGATAGCTGATACTCATGTCAAAGCCCAGGGCGGCCCGCTTGGCGATTGCCATGCCCACCGC
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| Amino Acid Sequence |
>type VI secretion protein
MSLPISPLPELVSQLLEPISAESPCGPDLRYEPEYDQLRELRREDDTSLPTGVWQSSIKRALWPDLERLATTLLLERSKDLMISAWLGEAWLHMAGLEGL PGSLALVAGLCERYPEQLHPQAEEGDQSWRVIPLEWLARRYSEVLLTRVPLFDGREQAFAAFCLDDWQRLQRQQVLVNDSKNAKASAEAARNDQKKLSEL IRNTPLSFWLHRQGSLMLSLQHLQRLEAWSDAYLGNLAPGYKSLQDVMQALLALVEEFIAMHPQQPTVAPVQTSPATTTSTSQPQTAPAQVFQEPANREE AYRQLLVIAGYLARTEPHSPVPYLIRRGVEWGNKPLSELLGELISADAESRRLWTLLGVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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