Pseudomonas kilonensis 1855-344, VP02_RS13935
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas kilonensis strain 1855-344 contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAACTGATCGAGCCTGACGAGCAGCTGGATCTGTTCGCCTGCCAGGAAGTACGGGTGCACCTGGTGACCCGGCAGTTGGAGCTGGGTGGCTCGGCCGA CCGGACCCTCTGCGGCAGCCTGCTGCCGGCCCAGCCGCGCTGGTCGAGCGTCGATCGCAAGATTTTCCAGGATCATCGCCTGTGCTCGCTGTGCCGGGCG ATCCTGGAATCCCAGAAGCGCGGCACTTCGCCGATCTGGCCGGAGCTGCGGTTCGAGCTGTAGTCCCCTGACTCCCCACATGTCCCTTGTGGGAGCGAGC TTGCTTGCGATGGCGGCGGCACATTCAACATTGATGCAAGCAGACCCACCTCTATCGCGAGCAAGCTCGCTCCCACAGGTTTCATTTCAGTTCCAGACAT GCTGCGCATCGGACGCCTGCCACCGCTCTCCCCGAAATAACAGGTGGCAGTGTACAATCGCCGTTTTCATACCCTGTTCGATCTGCGAAGGATTTCCCGG
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| DNA Sequence for Gene |
>VP02_RS13935
ATGTTGCCGCGCTTGCCTGCCGTCGCCCGCTGCCTGTCTCTTGCCGCCCTGTGTATGGCGGGCCCCGTTGCCGCCCTGGAGCTGCCTCTGCCACCGCCGG GTGAAGACATCATTGGCCAGGTGCAGGTCATCAAGGCCAAATACGAAGACACCTTCGCCGACCTGGGCACCACCTATGACCTGGGCTACAGCGAGATGGT CGCCGCCAACCCGGGGGTCGATCCCTGGTTGCCGGGCGCTGGCACCGAGATCGTGCTGCCGACTCGCTTCATCCTGCCACCGGGCCCGCGCGAAGGCATC GTGATCAACCTGGCCGAGTACCGTCTCTACTATTTCCCCAAGGGGCGGAACGTGGTCTACACCTTCCCGCTGGGGATTGGGCGTGAGGGCTGGGGATCGC CGATCGCCCACACCAGCATCATCGCCAAGACACCGAACCCGACCTGGACCCCGCCGGCATCGATCAAGGCCGAACACGCCGCCGACGGCGATCCGCTGCC GAATGTCGTGCCGGCCGGTCCCGATAACCCGCTGGGCCCGTTCAAGTTCACCCTGGGCACCCCGGGCTACCTGATCCATGGTTCGAACAAGAAGTTCGGC ATCGGCATGCGGACCAGCCACGGCTGCTTCCGGATGTTCAACAACAACGTCCTGGAAATGGCGGGCATGGTGCCGGTGGGTACATCGGTGCGGATCATCA ACGACCCCTATAAGCTGGGCTTGAGCGGTGGCAAGGTGTACCTGGAAGCTCACACACCGTTGGACGACAAGGGCAACCCGTCGGTGGTGGACAAGCACAC CGCAGTGATCAACGCGATGCTCAAGCGTGAAGACATCACCAGCAACTTGCGCATGAACTGGGACGTGGTGCGGGACGTGGTAGCGGCCGAAGATGGCCTG CCTGTGGAAATCGCTGTTCCGAACACCTCGGCACCGATGGTTACGAGCGCGCCGATCGACTTGCAGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAAGCTCGAAAACAACCCGCCGACGTTTCGCGATGTCGGCGGGTTTTTTATTGCCTGCTAAAACTCAAGCAATAAAAAAGCCGACCCAAAAATGGGTCGG CTCGATAACAATCCCGAGGGACTATTACTTGCGGCTAGCTTTTTCCAGCATGCGCAGAGCACGCTCGTTAGCTTCGTCAGCAGTCTGTTGTGCTTTTTGA GCAGCAGCCAGAGCTTCATCAGCTTTACGGTAAGCTTCGTCTGCACGAGCCTGGGAGCGAGCTGCTGCGTCTTCGGTAGCAGTCAGACGTGCTTCGGTTT CTTTCGATGCGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAGGGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGGTTTCCCCTTCAAGGACTTTCT ATTAGTGACTGTCTCCCCAGACTGAGGAGTTAGCCGGCGTACATACTACCCATTACTTGTAGTAAGTAAACTGACGTAGCGCAAGAAGCAAAAAAATTGT
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| Amino Acid Sequence |
>transpeptidase
MLPRLPAVARCLSLAALCMAGPVAALELPLPPPGEDIIGQVQVIKAKYEDTFADLGTTYDLGYSEMVAANPGVDPWLPGAGTEIVLPTRFILPPGPREGI VINLAEYRLYYFPKGRNVVYTFPLGIGREGWGSPIAHTSIIAKTPNPTWTPPASIKAEHAADGDPLPNVVPAGPDNPLGPFKFTLGTPGYLIHGSNKKFG IGMRTSHGCFRMFNNNVLEMAGMVPVGTSVRIINDPYKLGLSGGKVYLEAHTPLDDKGNPSVVDKHTAVINAMLKREDITSNLRMNWDVVRDVVAAEDGL PVEIAVPNTSAPMVTSAPIDLQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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