Pseudomonas fulva NBRC 16636 = DSM 17004, PFU01S_RS00535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva NBRC 16637 = DSM 17717 strain NBRC 16637, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGATCAGGCCTGGCAAACGCGGACATGCATCGAAGTACCTGAATGATTCGCACCGCACCGCACGGCGACGCTCGACAAAACAGCGCTTCCCTATTGGCT GGTGAATTTTTATACTATCGAGTCCGCCTGCCCACTAATGGGCTGCACGCCTACCGCATTTGCTACTGAGGAAGACCATGGCCCGCGTAACTGTTGAAGA CTGCCTGGAACACGTGGATAACCGTTTTGAGCTGGTCATGCTCTCGACCAAGCGCGCTCGCCAGCTGGCGACCGGCGGTAAAGAGCCACGCGTTGCATGG GAAAACGACAAGCCTACCGTCGTCGCCCTGCGCGAAATCGCCGAAGGCATCGTGACCAACGAATTCATCGCCGCTGAAGAAATTGTCACCGAGGATCCGG TCTTTGCCGCGTTCGAGGACGAGTCGAACGAGGCTGTCTGATTGATGCCCGGTCGACGTCGCGAGGCGCAAGGCCCCCTATCTCGGCAGGAGGCTAAGCC
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| DNA Sequence for Gene |
>PFU01S_RS00535
ATGCCGGGTATAGAGGCCTTGGCCGAACGGCTGTCGACTTACCTAGGCCCCGAACAGGTCAACCTGGTACGGCGCGCCTACTTCTACGCCGAACAGGCGC ACGATGGGCAACGTCGTCGCAGCGGTGAGCCCTACGTGACGCACCCGCTGGCCGTGGCCAGCATCCTTGCCGACATGCACATGGACCATCAAAGCCTGAT GGCGGCCATGCTCCATGACGTGATCGAAGACACTGGTATTGCCAAGGAAGCCCTCAGCCAGCAATTTGGCGAGACGGTTGCCGAGCTGGTGGACGGGGTC AGCAAGCTGACCCAGATGAACTTCGAAACCAAGGCCGAGGCGCAAGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCACGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGCGAGAAACGGCGCCGGATCGCCAAGGAAACCCTCGAGATCTACGC ACCCATCGCCAACCGCCTGGGGATGCACACGGTACGCGTCGAGTTCGAAGACCTTGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATCCATCGC GCCGTCAAGAGTGCACGGGGCAACCGCAAGGAAATCGTCGCCAAGATCGAGCAGTCGCTGGCCAACTGCCTGGCTGCCGACGGTATCGAAGGCGAGATCA GTGGTCGACAAAAACACCTCTATGGCATCTACAAGAAGATGCGCGGCAAGCGTCGCGCCTTCAACGAGATCATGGACGTGTATGCCTTCCGCATCATCGT CGACAAGGTCGATACCTGCTACCGCGTCCTCGGTGCCGTACACAACCTGTACAAGCCGCTGCCAGGGCGGTTCAAGGACTACATCGCCATTCCCAAGGCC AACGGCTACCAGTCGTTGCACACCACCTTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATCCGTACGCGCGAAATGGAAGAGATGGCCAACAACG GTATCGCTGCGCACTGGCTGTACAAGGCCAATGGGGATGAGCAGCCCAAGGGCAACCATGCCCGTGCCAGGCAGTGGGTCAAAGGCATACTTGAATTGCA GCAGCGTGCAGGCAACTCGCTGGAGTTCATCGAGAGCGTCAAGATCGACCTGTTCCCGGACGAGGTTTACGTTTTCACGCCCAAAGGCCGCATCATGGAG CTGCCCAAGGGCTCCACTGCCGTGGACTTCGCCTACGCGGTGCACACCGACGTCGGCAACAGCTGCATCGCTTGCCGTATCAACCGGCGCCTGGCACCGC TCTCCGAGCCGTTGCAGAGTGGCTCGACGGTAGAGATCGTCAGCGCACCAGGGGCCCGACCCAATCCGGCCTGGCTCAATTTCGTGGTCACCGGCAAAGC GCGCACACATATTCGCCATGCGCTCAAGCAGCAGCGCCGCTCCGAATCCATCAGCCTGGGCGAGCGGCTGCTCAACAAGGTGCTGACCGGTTTCGACAGC GCGCTGGAACAGATTCCGCGCGAGCGCGTGCAGGCCATCCTCAGCGAATACCGCCTGGAGTTGATCGAAGACCTGCTCGAAGACATCGGGCTGGGCAACC GCATGGCCTACGTGGTCGCTCGCCGCCTGCTGTCTGCAGAAGGCGAGCAACTGCCGGCCCCTGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCTGGT GCTCAGCTATGCCAAGTGTTGTACGCCGATTCCGGGCGACCCGATCGTGGGCCACCTTTCGGCGGGCAAGGGTATGGTCGTGCACCTTGAGAACTGCCGA AACATCAGTGAAATTCGTCACAATCCCGAGAAATGCGTCCAGCTTTCCTGGGCCAAGGACATCACTGGCGAATTCAACGTCGAATTGCGCGTAGAGCTGG AGCACCAGCGCGGCCTGATCGCCTTGCTGGCCAGCAGCGTCAACGCGGCCGATGGCAACATCGAGAAGATCAGCATGGACGAACGCGACGGCCGTATCAG CGTGGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCGCGTGTGATCAAGAAGCTGCGTACCCTGACTGGTGTAGTTCGCATCACCCGCATG CGTACGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCAACCGCAAGGAGTCATCATGAGCAAGACCGTCATCAACAGCGACAAGGCCCCTGCCGCCATCGGCACCTACTCGCAGGCGATCAAGGCCGGTAA CACCGTGTACATGTCTGGCCAGATCCCGCTGGACCCCAAGACCATGGAACTGGTCGAAGGCTTCGAGGCCCAGACCGTCCAGGTGTTCGAGAACCTCAAG GCTGTGGCCGAAGCAGCAGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTGACCGACTTGAGCCATTTCGCCAAGGTCAACGAGGTAATGG GTCGCTACTTCGAGCAGCCTTATCCCGCTCGCGCCGCCATTGGCGTAGCCGCGCTGCCAAAAGGCGCGCAGGTCGAGATGGACGCCATCCTCGTCATCGA GTGATGCCCCAGGCGGCGAGCATTGCCCTCGCCGCCCTCTCTCTCCTGAAAGGTTCCCGTCATGCGCATAGCTTTGCCTCTCACGCTGGCAGCCCTGGTT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPGIEALAERLSTYLGPEQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALSQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLIHR AVKSARGNRKEIVAKIEQSLANCLAADGIEGEISGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKANGDEQPKGNHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLTGFDS ALEQIPRERVQAILSEYRLELIEDLLEDIGLGNRMAYVVARRLLSAEGEQLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCVQLSWAKDITGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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