Strain | Pseudomonas fulva NBRC 16637 = DSM 17717 strain NBRC 16637, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGGCCTTCTACGGCATGTCCACCTTCGAAGGGCCGATGATGGCCATCAAGACGGTGAACTCGCTGTCGCACTACACCGACTGGACCATCGGCCATGTGC ATGCCGGGGCCCTGGGCTGGGTCGCGATGATCTCCATCGGCGCCGTGTACCACATGATCCCGCGCCTGTACGGGCGTGAGCAGATGCACAGCATTGGCCT GATCAATGCCCACTTCTGGCTGGCGACCATCGGCACCGTGTTGTACATCGCCTCGATGTGGGTCAACGGCATCACCCAGGGCCTGATGTGGCGCGCCATC AACGACGACGGCACCCTTACCTACTCGTTCGTCGAAGCCCTGCAGGCCAGCCATCCGGGCTACATCGTTCGCGCGCTGGGCGGCGCGTTCTTTGCCAGCG GCATGTTGCTGATGGCCTATAACGTGTTGCGCACCGTGCGCGCGGCCAACCCGGTGGAGGCTGAAGAAGCCGCCAAGATCGCTGTCGTGGGAGCGCACTG
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DNA Sequence for Gene |
>PFU01S_RS05560
ATGAAGCACGAAGCCGTAGAGAAGAACATCGGCCTGCTGGCTTTCTTCATGGTGATCGCCGTCAGCATCGGCGGGCTCACCCAGATCGTCCCGTTGTTCT TCCAGGACGTGACCAATCAGCCGGTCGAAGGCATGAAGCCGCGCACCGCACTGGAGCTTGAAGGCCGGGACATCTACATCCGCGAAGGGTGCGTGGGTTG TCATTCGCAGATGATCCGCCCATTCCGGGCAGAGACCGAGCGCTACGGCCATTACTCGGTCGCCGGCGAAAGCGTCTGGGACCACCCGTTCCTGTGGGGT TCGAAGCGCACCGGCCCGGACCTGGCCCGGGTCGGTGGGCGCTATTCCGATGACTGGCACCGCGCCCACCTGTACAACCCGCGCAACGTGGTGCCGGAAT CGAAGATGCCGGCCTACCCATGGCTGGTGGAAAACACCCTCGATGGCAAGGACACCGCTCGTAAGCTCCAGGTGCTGCGCACCCTCGGGGTGCCCTACAC CGATGCCGACATCGCCGGCGCTCGGGATGCGGTCAAGGGCAAGACCGAAATGGACGCCCTGGTGGCGTACCTGCAAGGCCTTGGCACCCTCATCAAGAGC AAACGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGGCGATGGATATCGGAATGATTCGCGGCCTGGGCACCGTGGTGGTGCTGGTGGCCTTCATCGGCCTGGCGCTGTGGGTGTTCAGCCCGCGGCGCAAGAA AGACTTCGACGAAGCGACCCAACTCCCCTTTGCCGATGACCCCCAGGCCCGCCAACACGTCGAGCACGCACAAGAAAAGGCATCCGGGAGCAAAAAACAA TGACAACGTTCTGGAGTGTGTACGTCACCGTTCTGACCCTGGGCACCATCCTCGCCCTGACCTGGCTGCTGCTGTCTACCCGCAAGGGTCAACGCGAGGA GACCACCAGCGAAACCGTCGGCCATGCGTTCGACGGTATCGAGGAATACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTCGGCACCATTGTC TTCGCCCTGGGCTACCTGGCCCTGTACCCGGGCCTGGGCAACTGGAAAGGCATCCTGCCCGGCTACGCTTACCTGGATAACGACAAGCAGGCCGAGTTCT
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Amino Acid Sequence |
>cytochrome c oxidase cbb3-type subunit II
MKHEAVEKNIGLLAFFMVIAVSIGGLTQIVPLFFQDVTNQPVEGMKPRTALELEGRDIYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVWDHPFLWG SKRTGPDLARVGGRYSDDWHRAHLYNPRNVVPESKMPAYPWLVENTLDGKDTARKLQVLRTLGVPYTDADIAGARDAVKGKTEMDALVAYLQGLGTLIKS KR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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