Pseudomonas frederiksbergensis SI8, JZ00_RS26220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas frederiksbergensis strain SI8 contig00023, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCATGGGCCATGCTGGCGCAATCATCTCTGGCGGCAAAGGCACTGCAGACGAGAAGTTCGCTGCACTGCAGGACGCAGGCGTGAAAACCGTGCGTTCG CTGGCAGACATCGGCAAGGCCCTGGCCGAGCTGACAGGCTGGGAAATGAAGAAGTAAGCTTCGGCTGACTTTTTTGTTCCAGCAACAAAGGCCACCTTCG GGGGGCCTTTGTCGTTTCTGGCCTTTGGGCATGCTGACCTGCCTTTGTGGCCTGCACAAACTACAGCGACCCGGAAAAATAGATATGTAAACGCGACACG GAAACGTCGTGTATCGGATAGTTCGCCCTGTAACAGTGCGTTTTGCGTCCAAATTCGTTAGTCTGGCGGCCAATTTTGCGACCGCAGCCCACAAGGTAGC GACGCGCTAAACGGGTCGATCCCATACGGATCGGCAGCATTTCCCTCACCCCTCAGGGAAATCCCTCTCTAAATTCCGATTCAGTAGTGTGGTTTCCTTA
DNA Sequence for Gene
>JZ00_RS26220
ATGAAAGTGTTGAAAGGCCAGGACATCCTGGCGCTTGGTTTCATGACATTTGCCCTGTTCGTCGGGGCCGGCAATATCATCTTCCCGCCTATCGTCGGTT TGCAGTCCGGACCTCATGTCTGGATGGCGGCGCTGGGCTTCCTGGTCACCGCGGTCGGCTTGCCAGTGATTACCGTCGTTGCGCTGGCCAAGGTCGGCGG GGCGATGGATGCGTTAAGCAGCCCCATCGGCAAAATCGCCGGCGGGTTGCTGGCGGCGGTGTGCTATCTGGCTGTCGGTCCGCTGTTCGCCACGCCGCGT ACCGCCACCGTGTCGTTCGAAGTCGGCCTGGCGCCGCTGACCGGCGAAAGCCCGCTGGCGCTGTTTCTCTACAGCGCGGTGTATTTCCTGCTGGTGTTCT TCATTTCGCTCTATCCGGGCCGCCTGTTGGATACCGTGGGACGCTTTCTCGCACCGTTGAAGATCATCGCCTTGGCCGTATTGGGCATCGCTGCGTTTGC CCTGCCAGCCGGTAATATCGGCGTGGCGACACCCGAGTACGTGGCGGCGCCGTTCTCCCAGGGCTTTATCAATGGTTACCTGACCATGGATACCCTTGGC GCCTTGGTGTTCGGCATCGTCATCGTCAACGCCATCCGCTCCCGTGGCGTCGAGTCGCCGGCCTTGATCACCCGTTACGCCATCATCGCCGGGCTGATTG CCGGGGTGGGCCTGGCGCTGGTCTACATCAGCCTGTTCCGCCTGGGGTCCGGGAGCCACGAAGTGGCGGCGGGCGCGACCAATGGCGCCGCCGTGTTGCA CGCTTATGTACAGCACACCTTCGGCAGCCTGGGCAGCGGTTTCCTAGCGGTGTTGATTTCCCTGGCGTGCCTGGTGACTGCGGTCGGCCTGACCTGCGCT TGCGCCGAATACTTCAGCCGCGTCCTGCCGTTGTCCTACAAGACCTTGGTGGTGATCCTGGCGGCGTTCTCGCTGCTGGTGTCCAACCTGGGCCTGACCA AGTTGATCGCTTTCTCGATTCCGGTCCTCACCGCGATCTACCCGCCGTGCATTGCCCTGGTGGCCCTGAGCTTCTGCAAGGATTTCTGGCATGAGCAAGG GCGCATCGTCGGCCCGGTCATGCTGGTGTCGTTCCTGTTCGGCTTGATCGATGCCCTCAAGGGCGCCGGGTTGGCGGATTGGATGCCGACGGAACTGGCC CACCTGCCGCTCAGTGAACAGGGCCTGGCCTGGCTGGTGCCTTCGGTCATGACCCTGGTGGTCGCGGTGGTGTGTGATCGGTTGCTGGGCAAGCGGAGCG AAGCGTTGGCGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGACAACAGGCAACTCCACCGGCAAGAACCGAAATGCCCCGTATCAGTCGATACGGGGCATTTTTCTTGAGTGCATGTCCGTGGATTGTGGAAGCGAGC CTGCTCGCGAAAGCGTTGGAACTGCCGACAATGAAGTGACGGTTATACCGAAATCGTCGGATCGCCGCCGCAGCAGGCTTTCTCCGCCAGGGTTCGCTGA TACTATTGCCACCGATTTTGTTTCTGCCACAGGGAATTGCATGTCATTCATCCAAGCCAACCTGATCCATCTCCTGGCCGCGGTATGGTTCATTGTCTGC TGGGCCGGCTATACCCGTTACGCCTCCTGGAAAGCCCGCGACACGGCCTGCCTGGCCAGCGTGATGCACTTGTACCGTGAGGACTGGATGCGTCGCATGC TGCTGCGTGACAACCGAATCGCCGACGCCAGCGTGATCGGCAACCTGGAGCGCAATGCTTCGTTTTTCGCCTCCAGCACGCTGATCATCCTGGCCGGTAT
Amino Acid Sequence
>branched-chain amino acid ABC transporter substrate-binding protein
MKVLKGQDILALGFMTFALFVGAGNIIFPPIVGLQSGPHVWMAALGFLVTAVGLPVITVVALAKVGGAMDALSSPIGKIAGGLLAAVCYLAVGPLFATPR TATVSFEVGLAPLTGESPLALFLYSAVYFLLVFFISLYPGRLLDTVGRFLAPLKIIALAVLGIAAFALPAGNIGVATPEYVAAPFSQGFINGYLTMDTLG ALVFGIVIVNAIRSRGVESPALITRYAIIAGLIAGVGLALVYISLFRLGSGSHEVAAGATNGAAVLHAYVQHTFGSLGSGFLAVLISLACLVTAVGLTCA CAEYFSRVLPLSYKTLVVILAAFSLLVSNLGLTKLIAFSIPVLTAIYPPCIALVALSFCKDFWHEQGRIVGPVMLVSFLFGLIDALKGAGLADWMPTELA HLPLSEQGLAWLVPSVMTLVVAVVCDRLLGKRSEALA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site