Pseudomonas frederiksbergensis SI8, JZ00_RS25855
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00022, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAACGGCGACAGCTTCAACATCAAGGATTTGCTGCGTCCGGCCACGTTCGTGCCCGAGTCGAAGCGCCTGAACGTGCTGTTGCGTGAATTCCGCGCCAA CCACAACCACATGGCCATCGTCATCGACGAATACGGCGGCGTGGCCGGGCTGGTCACCATTGAAGACGTGCTCGAACAGATCGTCGGCGACATCGAGGAC GAGCACGATGTCGAGGAAGACAGCTACATCAAGCCACTGCCCAGCGGTGATTTCCTGATCAAGGCCCTGACGCCGATCGAAAACTTCAACGAGTTCTTCG ACAGCGAATTCTCCGATGATGAGTTCGACACCGTCGGCGGCCTGGTGATGAGTGCTTTCGGCCACCTGCCCAAGCGCAATGAAACGACGGAGATCGGCTC CTGGCGCTTCCGCATCCTGAATGCCGACAGCCGCCGGATCCATCTGCTGCGCCTGTCACCCATTGGCCGATAACCCTTTCAAGACCCGCTAAGGACAAAA
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| DNA Sequence for Gene |
>JZ00_RS25855
ATGCGCTGGATAACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCGTGGTGGCTGGCGCGATCACCACCCTGGCCCTGGCGCCCTTTGACATCTGGCCGC TGGCATTGCTGGCGGTCGGGTTGTTCTATGCCGGGCTGCGTGAGCTTTCACCGCGCCAGGCCTTGGGTCGTGGCTGGTGCTTCGGTTTTGGCCTGTTTGG CGCCGGCACCAGTTGGATCTACGTCAGCATCCATAACTTCGGCGGCGCCTCGGTGCTGCTCGCCGGCTTCTTGATGCTGCTGTTCATCGCCGCCATCGCC TGGTTCTTCGCCCTGCCCGCCTGGCTCTGGGCGCGCTGGTTGCGCCGTAACGAGGCGCCATTGGCCGATGCCCTGGCCTTCGCCGCGCTGTGGTTGGGCC AGGAAGCGTTTCGTGGCTGGTTCCTGACCGGTTTCCCTTGGCTTTACTCCGGCTACAGCCAGCTCGACGGCCCGCTCGCCGGCCTCGCGCCGCTGGGAGG TATGTGGCTGATTTCCTTCACACTGGCCCTGACCGCCGCATTGCTCTACAACGCGCCCCGGTTGCTGCGTTCCGGACGCAAGGCCTTCATCGTCGCGGGC GTGGCGTTGCTGATCGGCCCATGGGCGGCCGGCATCGCGCTCAAAGGACACGCCTGGACCAGCCCTTCGGGCGATCCGCTGAGTGTCGCGGCGATCCAGG GCAACATCGAACAAAGCATGAAGTGGGATCCCGAGCAGCTCAACGCGCAACTGGCGCTGTATCGCGACATGAGTTTCACCTCCAAGCGCGTCGATCTGCT GGTCTGGCCGGAAACCGCCGTGCCGGTCTTAAAGGAATCGGCCCAGGGCTACCTGGACATGATGGGCAGTTTCGCCGCCGAGCGGCGTTCAGCGCTGATC ACTGGCGTCCCGATTCGCCAGGAAGTGCGCCACGAAAAACGCTACTTCAATGGCATCACCGTGACCGGCGAAGGTGACGGCACTTACCTGAAGCAAAAGC TGGTGCCTTTCGGCGAATACGTGCCATTGCAGGATCTGCTGCGTGGGCTGATCGCCTTTTTCGACCTGCCGATGTCGGATTTCGCCCGTGGCCCGGCTGA CCAGCCATTGCTCCAGGCCAAGGGTTACCAGATCGCGCCGTTCATTTGCTATGAAGTGGTGTACCCGGAATTCGCCGCCAGTCTCTCAGCGAGAAGCGAC CTGCTGCTGACCATCAGCAACGACACCTGGTTCGGCACCTCGATCGGCCCGCTGCAGCACCTGCAAATGGCCCAGATGCGCGCCTTGGAGGCCGGCCGCT GGATGATTCGCGCCACCAACAATGGCGTGACCGGCCTGATCAACCCCTTCGGCCAGATCACCGCACAGATCCCACAGTTCCAACGCGGCATCCTCTATGG CGAAGTGGTGCCGATGCACGAACTGACGCCGTACCTGCAATGGCGCTCGTGGCCGCTGATCCTCCTGTGCGTGTTGCTGCTGGGCTGGGCGTTGGTGGCG AGCCGGATGGCCAAGACGGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGTTCCCCATGTGAATGAAAACCCTGTGGCGAGGGAGCTTGCTCCCTCGCCACAACAGCTATCACTTCGCTCCACGCGGTGTGTCAGCGATAGAACAA CCAATACCCCACCAGCCCCGCCGCCTCGTTCATCAACTGCCCGGATTGCCAGATCGCCTTGAACTCCGGCATCCAGCCACCCAGTGGCCGGGCGTTGTCC TGACCCAGGAACCCGACAGGCGCCGGCACCACTTCAAAACCCGAACGCTCGAAACTCCAAACCGCCCGCGACATGTGCCAAGCCTGGGTGACCACCACGA CTCGCTTGATACCTGCGGGCAGCAGGATCTCGGCGCCCATCTGGGCGTTTTCCCACGTGGTGCGGCTACGCTCTTCCTGCCAACGCACGGCCACGCCGAA GTCATCGAGCATCGAGTCGGCCATCAGCTTCGCCTCGCTGGGCGGGGTTCCGTAGTGCAAGCCGCCGCTGGTGAGCACCGGCAGCCCGGACGCCTTGGCC
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| Amino Acid Sequence |
>acyltransferase
MRWITRPGWPGNLLAVVAGAITTLALAPFDIWPLALLAVGLFYAGLRELSPRQALGRGWCFGFGLFGAGTSWIYVSIHNFGGASVLLAGFLMLLFIAAIA WFFALPAWLWARWLRRNEAPLADALAFAALWLGQEAFRGWFLTGFPWLYSGYSQLDGPLAGLAPLGGMWLISFTLALTAALLYNAPRLLRSGRKAFIVAG VALLIGPWAAGIALKGHAWTSPSGDPLSVAAIQGNIEQSMKWDPEQLNAQLALYRDMSFTSKRVDLLVWPETAVPVLKESAQGYLDMMGSFAAERRSALI TGVPIRQEVRHEKRYFNGITVTGEGDGTYLKQKLVPFGEYVPLQDLLRGLIAFFDLPMSDFARGPADQPLLQAKGYQIAPFICYEVVYPEFAASLSARSD LLLTISNDTWFGTSIGPLQHLQMAQMRALEAGRWMIRATNNGVTGLINPFGQITAQIPQFQRGILYGEVVPMHELTPYLQWRSWPLILLCVLLLGWALVA SRMAKTV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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