Pseudomonas frederiksbergensis SI8, JZ00_RS25130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00020, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCGCCCAACGACTGCGGGCGCGTAGATTAAACTTCATTAGGTATCCTGATGATTCTTGAGCACCTCGCCGCTAGTGGCGTCGAGTTCCAGGTCCCAC TCGATGCCATCGGCATCACGCAGGTCCACCTTGTAACGGTACTTGCCGTATTCCTCTTCCAGCTCGGTATCGGTCACTTCAGAGCCGGGATGCGTGGCCA GAGCAGCGGCCTTGAGCTTTTCAAGCGATTGAATGGTACCAGCGTCCAGCAGTTTTTTGATCTCGTGATCATGGAGGTCTCGCGCTTGCGCCAGGCCAGC GCCAAGAGCCATGAGCGTCGCGAGAATAAAGGCAGTCAGGCGGTTCACGGGTTCTCTCCTTTTTATAATCATCACCGGAAACTGTATCGGGGTGAACTTA ACTGAAACTGAATTGCCATCATGGGACCCACATCAATGCGGGAGCTCCCACCGCGTCGTGTGTCGCTATAATCAGCCGCTTGCCAGTATTAGAGACCGGT
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| DNA Sequence for Gene |
>JZ00_RS25130
ATGACTGCCATCCATATCAAATTCCCCGCCCTCACCCTCAAGGCCGGTCCCCGTGCCTTCAAGCGAATCCGCGAGGCCGGCCTCAACGCCGCCGACGTTG GCATCCTGCCCGGCGCCGCCGGTGGCCCGAAAGCCTTGGGCATCCAGGGATTGGACCTGGCCCTGTTCGGCGAATGGCTCCCTGCGGCGCCTCGGGAACG GTCGCTGATCGGCGCCTCGGTTGGCTCTTGGCGCTTTGCCAGCGCGTGCTTGCCGAACGCCGCCGAAGGCATCAGGCGCCTGGGCACTCTGTATAACGAG CAGAGTTTCGCCAAAGGCGTGACCATGGCCGGCGTCAGCCAAAGCTCCCAGCGCATGCTGGACGATCTGCTGGAAGGTCGCGACCTGACGATCCTCGACA ACCCCCATTACCGGCTCAATATCATGGTGGTCAAGAGCCACGGCCTGCTGTCACAAGACCACCGAGGCCGGCTGGGCCTCGGGTTGTCGTCGGTGATCGC CGACAACCTGCGAGGCCGTGCGCGCCTGTCGCGACATTTCGAACGGCTGATCGTGCACGACCCACGGTTGGCGCCACCGCTGCATCCCCTGACAGACTTC CCTTCACGCTTCGTGCCCCTGGTGGCCGACAACCTGCGCCAGGCCTTGCTGGCGTCGGGCTCGATCCCGATGGTGATGGAAGGCGTGCGCGACCTTCCCG GCGCCGGTGCCGGCACCTACCGCGACGGGGGTTTGCTGGACTACCACCTCGACCTGCCCTACAGCGGCGAGGGCATCGTCCTTTATCCCCATTTCACCGA CCGGGTCATCCCTGGCTGGTTCGACAAAGGCCTGCCATGGCGCAAGGGCAGCGCCGAACGCCTCCAGGACGTGCTGCTGCTCGCCCCGTCGCGCGAATAC CTGGCCCGCCTGCCCTACGGCAAACTGCCGGATCGCAACGATTTCAAGCGCTTCATGGGCGATGACCCGAGCCGCCGTAGATACTGGCGCACGGCGATGG ACGAAAGCCGCCGGCTCGGCGACGAGTTCCTGGAGCTGACGGCCAACGGTGGATTGGGCGAGCGTTTGCTGACCCTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGCATGCTCGCGCATCACAGCGTCAAAGGCGCGACGTCTTGGATTAGAGCTTGTTTGAACGAGCCAAATAAGACCAAAATAAAGCCCTTTTAAAGGAG CCAATTTTATGCAAACCGTTTTGGCTGATGTGGCCGTCAGCGTATCTGAACTGAAAAAAATCCATCTGCGGTCCTGAGCGGAGCGAACGGTTCGCCTGTG GCTGTGTTGAACCATAACCGCGTGATGGGCTACATGGTACCGGCCGATGTCTACGAGGCGATGATTGAACGCCTGGATGAATTGGAATTGGCCCAAGTGG TCAAGGCACGGCTTGAGGCCAACGAAACGCCCGTTCGCGTTTCAATCGATGATCTGATAGGCGAGGCTGAGGCTGATATAGCCAATGGGCGTTGAGTATG GTGTTGAATGGAACCCAAAGGCCCTGAAGTAACTCAAGAAACTGGACGGCGCTATCCGTCTACAGCTATTGAAAAAGCTTCGGGAACGACAAAAGCAGCC
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| Amino Acid Sequence |
>hypothetical protein
MTAIHIKFPALTLKAGPRAFKRIREAGLNAADVGILPGAAGGPKALGIQGLDLALFGEWLPAAPRERSLIGASVGSWRFASACLPNAAEGIRRLGTLYNE QSFAKGVTMAGVSQSSQRMLDDLLEGRDLTILDNPHYRLNIMVVKSHGLLSQDHRGRLGLGLSSVIADNLRGRARLSRHFERLIVHDPRLAPPLHPLTDF PSRFVPLVADNLRQALLASGSIPMVMEGVRDLPGAGAGTYRDGGLLDYHLDLPYSGEGIVLYPHFTDRVIPGWFDKGLPWRKGSAERLQDVLLLAPSREY LARLPYGKLPDRNDFKRFMGDDPSRRRYWRTAMDESRRLGDEFLELTANGGLGERLLTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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