Pseudomonas frederiksbergensis SI8, JZ00_RS24820
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00019, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCGCGGTGGTCAATTCGCCATTGGCCTGTAGCGTGCTGAGCAGCTCGCTCTGGGGGAACTGGCGCATCTTCAGGGCGTACTCGATGGCGGGGCCGTCG CCGCCAAGGATTGGTTCTTCGTCGCTGCCGGTAATCGGCAGCACTTCCAGGTACAGATCCTGGGTCAGGCGCTGGTTCAGGCGCAATTCCTCGGCACAAA AGTGTTTGCGCGCGTCGAGGCTGGTGAAGTCGAGGAAGCCGAAATTCACCGGCTTCTTGAACTTGTAGGCGTAGGGACCGGTGAGCAATACCCATGAGAT GTGGGTTTCGATGACCTGGAACCCTTCGACGGGGTGCGGGTAAAGGGCCGGGTTTTGCAGGGCAGCGATCAGTGATTGGCTCACGGGCGATCCTTCAGAG ACTGGAAAATTCAAGGCGGTCATTATGGCCGCAAGCCGCGCTAACGCAAACCTCGGCGGACTCATGTTGAACCACGACAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>JZ00_RS24820
ATGACTCGTACCCGATCCCCCCGCACCCCCAAGAAACCACCCGCCAGCCGCCTGCGGCCCTGGTTGGGCTGGGCCCTTAAACTGAGCCTGGTAGGCCTTG TCGTGCTTGCCGGTTTTGCCGTCTACCTCGATGCCATCGTCCAGGAGAAGTTCTCTGGCAAGCGCTGGACTATCCCGGCGAAGGTCTACGCACGGCCGTT GGAGCTGTTCGTCGGACAAAAGCTGAGCAAGGTTGATTTCCTGACTGAGCTCGACGCCTTGGGTTATCGCCGCGAAAGCGTAGCCAATGGTCCGGGTGCG GCCTCGGTGAACGGCAACACCATCGACCTCAACACCCGTGGCTTCCAGTTCTATGAAGGCATGGAACAGGCGCAACCGGTGCGGGTGCGCTTTTCCGGCG ACTATGTTGCCGCGCTGACCGGTGCCAACAACGCGAGCCTGTCGGTGGTGCGCCTCGAGCCGCTGCTGATCGGTGGCCTTTATCCGAAGAATCTCGAAGA CCGGATCCTGATCAAGATCGACCAGGTGCCGCCGTTCCTGCTGGAAACGCTGATCGCTGTCGAGGACCGTGACTTCTACCATCACTTCGGTGTCTCGCCC AAGTCCATTGCCCGTGCCGTTTGGGTCAACACTTCGTCGGGGCACATGCGCCAGGGCGGCAGTACCTTGACCCAACAGTTGGTCAAGAACTTCTACCTGA CCAACGAGCGCAGCCTGACCCGCAAGCTGACCGAAGCCATGATGGCGTTGTTGCTGGAGCTGCACTACGACAAGCGGGAGATTCTGGAGGCGTACCTCAA CGAGGTCTTCGTCGGCCAGGACGGCCAGCGTGCGGTGCACGGTTTCGGCCTGGCCAGCCAGTTTTTCTTCAGCCAGCCGCTGTCCGAACTCAAGCTGCAT CAGGTGGCGTTGTTGGTGGGGATGGTCAAGGGACCGTCGTCCTACAACCCGCGTCGTAATCCGGAGCGTGCCCTGGAGCGGCGCAACCTGGTACTCGACC TGCTGCAACAACAAGGTGTGGCCACGGCCGAGCAAGTCGAGGCGGCGAAAAAAATGCCGTTGGGCGTGACCAAGCGTGGCAGCCTGGCGGACAGCTCGTT CCCCGGTTTCATGGACCTGGTCAAGCGTCAGCTGCGGCAAGACTACCGCGACGAAGACTTGACCGAAGAGGGCCTGCGCATCTTCACCAGCTTCGACCCG ATCCTGCAGATGAAGGCCGAAGCATCGGTCAATGACACCTTCAAGCGATTGGCGGGGCGCAAGGGTTCGGACGAAGTCGAAGCGGCCATGGTCGTGACCA ATCCGGAAACCGGTGAAGTCCAGGCGATGATCGGCAGCCGCCAGGCCAGCTTTGCAGGGTTTAACCGGGCCCTGGACGCGGTGCGGCCGATCGGCTCGCT GATCAAGCCGGCGGTTTATCTTACGGCGTTGGAAAAGCCGAGCCAGTACACGCTGACGAGCTGGCTGTCCGACGAGTCGTTTTCGATAAAGGGCGCGGAC GGCCAGGTGTGGACGCCGCAGAACTATGACCGTCGTCCCCACGGCACGGTGTTCCTGTACCAGGGGCTGGCGCACTCCTACAACCTGTCGACGGCTCGCC TCGGGCTGGAAGTCGGCGTGCCGAATGTGCTCAAGACCTTGGCGCGCCTGGGAGTAAACCGCGAGTTTCCGGCATTCCCGTCGATGCTGCTGGGCGCCGG TGGCCTGACGCCGATCGAAGTCGCGGCCATGTACCAGACGTTGGCCAACGGTGGCTTCAATACGCCGATGCGCGGTATCCGCAGCGTGCTGACTGCCGAC GGTGAACCGCTCAAGCGCTATCCGTTCCAGATCCAGCAACGCTTCGACCCGGCTTCCATATATCTGATCCAGAGCGCCATGCAGCGGGTCATGCGCGAAG GTACCGGCAGTTCGGTCTATAACGTGCTTCCGCGGACGTTGACCCTGGCGGGCAAGACCGGCACCAGCAACGATTCGCGCGACAGCTGGTTCGCCGGTTT CAGCCAGGACCTGCTGGCGGTGGTCTGGCTCGGACGTGATGACAACGGCAAGACACCGTTCACCGGCGCCACCGGTGCGTTGCAGGTCTGGACCAGCTTC ATGCGCAAGGCCGACCCGTTGCCGCTGGACATGCCGCAACCGGACAACATCGTCCAGGCCTGGGTTGATTCGCGCACGGGCCAGGGTTCCGATGCCAATT GCCCGGGCGCCGTGCAGATGCCGTATATTCGCGGCAGCGAACCGCCGCCTGGTGCAGCCTGCGGCGGCACGAATCCCGCCGAATCGGTGATGGATTGGGT CAAGGACTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGGTTTCAAGTGAACAAGTGGTTGATTCCAGCGGTAACCGCCGTGGCTTTGCTCAGCGGCTGTTCTACCGTACAGCGCGGTTCGATTCCGGTT GTCGACTCCGGTACGGCCGTCTCCAATAGCGAGCGGGTTTCGGCCAATGGTGGTTTCCGTCAAACGACGGTGAAGCGGCCGGTGCAGGGCCAGGCCCAGG CGATCCCGCAAGGCGACACCGGTGTGGTGGTGATGGTGCCCGGAGGTGGCGCGACAACTTCGGCACCGATCAGCAGCACGCCGATCACCCCAGGCCCAAT CACACCGGGGCCTATTGAAACCTCGCCGATCAATCAGGGCAGCTACAGCATGCCGTCGACACCGAGCAGTATTCCGTCGGCCAGCGCTGGAGGCTTGTCC GCCGATGAGCAACTGGACGGCCCGGTATTGGCGCTGTTGACCACGGCGCAACAGCAGCAGGCCGGTGGCGACCTCAACGGCGCTTCCTCAAGCCTCGAGC
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| Amino Acid Sequence |
>penicillin-binding protein
MTRTRSPRTPKKPPASRLRPWLGWALKLSLVGLVVLAGFAVYLDAIVQEKFSGKRWTIPAKVYARPLELFVGQKLSKVDFLTELDALGYRRESVANGPGA ASVNGNTIDLNTRGFQFYEGMEQAQPVRVRFSGDYVAALTGANNASLSVVRLEPLLIGGLYPKNLEDRILIKIDQVPPFLLETLIAVEDRDFYHHFGVSP KSIARAVWVNTSSGHMRQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMALLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKLH QVALLVGMVKGPSSYNPRRNPERALERRNLVLDLLQQQGVATAEQVEAAKKMPLGVTKRGSLADSSFPGFMDLVKRQLRQDYRDEDLTEEGLRIFTSFDP ILQMKAEASVNDTFKRLAGRKGSDEVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLIKPAVYLTALEKPSQYTLTSWLSDESFSIKGAD GQVWTPQNYDRRPHGTVFLYQGLAHSYNLSTARLGLEVGVPNVLKTLARLGVNREFPAFPSMLLGAGGLTPIEVAAMYQTLANGGFNTPMRGIRSVLTAD GEPLKRYPFQIQQRFDPASIYLIQSAMQRVMREGTGSSVYNVLPRTLTLAGKTGTSNDSRDSWFAGFSQDLLAVVWLGRDDNGKTPFTGATGALQVWTSF MRKADPLPLDMPQPDNIVQAWVDSRTGQGSDANCPGAVQMPYIRGSEPPPGAACGGTNPAESVMDWVKDWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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