Pseudomonas frederiksbergensis SI8, JZ00_RS24785

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas frederiksbergensis strain SI8 contig00019, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGCGACGCATTCGCCGCTTTCGATCAGGAACAGTGCGCCATGGGTCGCACATTGGATGAGACTGGCGCTGGCGTCGAGAAACTGGTCGGGTTGCCATT CCAGCGGCACGCCACGATGCGGGCAACGGTTGAGATAGACGTAGGCTTGGCCTGCGCGCCGCACAGCCAGCAACTTGCGCCCATCCATGTCGAAACCGCG ACTGCCGCTTTCAGGCAGCTCGGCGGTGGTACAAAGAAATTTCATGTGTGTCTCTAAATGTCATGAGGATGGGCTCTTTGTGGGAACGGCCTGCGTGCGA ATGCTGCGTGTCGGTGTTCTTGGTGTGGGCTGGCCCACTGCATTCGGGAGCAGCCTCGCTCCCACAGGGCTACGTCCATCAAGTTCGATGCTTGACGGTC AAATGAAAACAATTATCAAATGGCGCCTCCTTCGCAGGTGGCATTGAGGATACTTGTCCAAGCCCGATCCTGTGGAAAACTTCTTTGAGGAAGCTGCCCG
DNA Sequence for Gene
>JZ00_RS24785
ATGCGCCTGAATCTCCGCGTTGCTGCGCTCTGTGTCGTCTTGCTGGTAAGCCAGGGCGCGTTGGCGGCTGATCTGCCGCAGCGCTGGGTGAGCGCTGGCG GTGCCTTGTCCGAGTGGGCCTGTGCGTTGGGTGGTGAATCAAAATTGGTCGGAGTGGACACGACCAGTCAGCATCCCGATTCGCTGCGAGCGTTGCCCGG TATCGGCTATCAACGGCAACTGTCGGCGGAGGGCGTGCTGAGTTTGCGTCCGCAGATCCTGGTGGGGACCGAGGAAATGGGGCCGCCTCCAGTGCTGGCG CAGATTCGGGCCGCCGGGGTGCAGGTCGAATTGTTTTCGGCGGCGCCAAACCTGACCGCGCTCCAGGACAATTTGCGCCATTTGGGCCAGCTGTTGGGAA CCGAGGACAGGGCACGAGCGATGTTCGAGGATTATCAGATGCGCCTTTCCCAGCACGGCGCCCGCGTAAATGAAGCCCGGCTCAAGCAGAAGGCGCCGGG CGTGTTGCTGTTGGTGGGCAGCGCCGGCGGCAAGCCGCTGATTGCGGGCAAGGACACCGCTGCGGATTGGCTGTTGCAACAGGCTGGCGGCCACAACCTG GCGACCCATAGTGGTTATAAACCTTTCTCCGTGGAAACCCTGGCGAGCCTGAATCCCGAGGTGCTGATCTTCGCCGATCGTGCCTTGCGTGGCGAAGAGG CGCGTGTGGCGCTGTTCAAGGAGAATCCGATCCTGTCCTCCACGCGCGCCGCCAGGGATGGGCGCGTCATCGAGCTGGACCCGACGCTGTTAGTGGGCGG GCTGGGCCCACGTTTGCCGCAAAGCCTGGTGACGCTGACCAACGCGTTCTATCCGGTCCAGGTGCCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGCGCTGGTCAGGCCGCGCACTTTGTTTATAGGGCTGGGCCTGCTGTGTCTGCTGGCGTCCTGGCTGTCCCTGGCGTTGGGGCCGGTGAGCTTGCCACT GTTCGATACGTTGCGCGCCGCCCTGCGCCTGTTGGGTTTGCCGGTGGCCGGGGATGGCCTGGAGCAGGCCGAGCTGATCCTTGGCCAGATTCGTCTGCCA CGGACCCTGCTGGGGTTGGCGGTGGGCGGGGTGTTGGCGTTGTCCGGCGTGGCGATGCAGGGGTTGTTTCGCAACCCGTTGGCTGACCCGGGGTTGGTGG GCGTTTCCAGTGGTGCAGCGTTGGGTGCAGCGTTTGCCATCGTCGCTGGTTCAGCGCTGGGCGGTGTGCCCGAAGCGTTGGGCCCCTACGTATTGTCCTT GTGCGCGTTTCTGGGCGGGCTCGGGGTTACGGCGCTGGTCTATCGCCTTGGCCGGCACAACGGCCGGACGCATGTCGCTACCATGCTCTTGGCCGGTATC
Amino Acid Sequence
>ABC transporter substrate-binding protein
MRLNLRVAALCVVLLVSQGALAADLPQRWVSAGGALSEWACALGGESKLVGVDTTSQHPDSLRALPGIGYQRQLSAEGVLSLRPQILVGTEEMGPPPVLA QIRAAGVQVELFSAAPNLTALQDNLRHLGQLLGTEDRARAMFEDYQMRLSQHGARVNEARLKQKAPGVLLLVGSAGGKPLIAGKDTAADWLLQQAGGHNL ATHSGYKPFSVETLASLNPEVLIFADRALRGEEARVALFKENPILSSTRAARDGRVIELDPTLLVGGLGPRLPQSLVTLTNAFYPVQVP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site