Pseudomonas frederiksbergensis SI8, JZ00_RS23045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00016, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCTTCGCCATGCTGGACATCGACCATTTCAAGCGAGTCAATGACAGCCACGGCCACCCCATGGGCGACCGAGTCATCAAGAGCCTGGCGCTGTTTCTC AAGCAGCGCCTGCGCAAGACCGATTTCATCGGGCGCTACGGCGGTGAAGAGTTCGCCATCGTCATGCCGGACACCGACATTGACGCGGCTTGCAAGGTAC TGGACGAAATCCGCCAGCGCTTCGCCGAGATCCATTACCCGGCCCAACCCCAGGATTTGTGGTGCACCTTCAGCGCCGGGGTCGTGGAAATGAGCGAAGC GTCCGACAGCCTGATGATGGCCAGCCAGGCAGATGAAGCGCTGTACCGCGCCAAGCATGCAGGACGAAACAGGGTACAGAGCGCCAGGCAATCAAAGCAA AATGCCACCTTTTCATCGGAATCCACCGATTCGGTCATAAACGTGTAACGCAAACGCAATAACTTCAGGCACTTACGATTCTGCCCCCGGTAGACCCTTG
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| DNA Sequence for Gene |
>JZ00_RS23045
ATGCGCCTGAAGCTGCTCACCAATCTCAACACCCTTCTTTTAGTTGCCGTGTGCCTTGGCCTTGGCGCGACCCTTTGGTGGTCGCAAATTGCCCTGGAGC GACCTTACCTGCTGATGGAACGCTACTTGGGCCTGTCCCGGCAGTTCCAGGGCGAAGTGGCGCGCAACATCGAGGATTACCTGGCCAGCGGCGACGCCCT GCGCCTCAGCGCGGCCACCCAAGCGCTGGAGAGCCTGCAAAAGGAGCTGGACCAGTTCCCGCCGGACCTGGCCAAGGCCCTGCGCCCCAGCCTGTCGAAC CTCGACAGCTTCAGCAAGACTGATCTGCTGGCCGCCGGCAAACTGGCCGGCGATCCCCAGGCGCTGTTGTTGCAGGCAGAGCGGGAGCTGAGCGCCAGTC TCGATCAGATCTCCCAATACGCCAACGGCGCCCCGGCCTACTTGCCTCCGTTGTTTGCCGCTTCGCAGCACCTGGGCCGGTTGTCCCTGGCGCGGGACAA ACTGGTCAGCAGCGGCCGCAGCGAACTGGCCGCCGATGTCGAGCGGGAACTGACGAGTATCCGTGCCCAGGCGCAGCAGCTGGATAACTTGCCACTGCTC GGCGTCACCGCCAGCAGCCAATCGGGCAGCGATGATTTTGCCGCGTTGATGGGCCTGGAAACCCAGGAAAAAACCGTCGCCGAAGACGCCGGCATCGCCC TCAAGCGCGAACTCAACAGCTTGCTCGGCCGCTACCCCGCAGAGTTGGCCCGCACCCGGGAACTGATCCAGAAGCGCACCGAGCTGAGCAGCGCCACGCA TCTGAAAATTGCGGATGTGCAGAGGGCCGTCGACACATTGGAACCGGCAGTACGCGCCCAGCACGGGCAGATCCAAAGGGAGGTTCGCTTGATCCAGGGC GTGATGATCGGCCTGATCCTGTTGATCGCGCTGCTCATCGACACCTTGCAGCGACGCCTGGCACGCACCTTGACGCATTTGGCGCCAGCCCTGTCGACCT GGGCCGAAGGGGATTTCAGCCGGGATATCCATGTGGGCGCCAGCAACCGCGAATTGCAAGACATCGAGGCCTCGCTCAATCGTCTGCGCGCTTATCTGGT GGACCTGGTGGGCACCATTCGAGTGAATGCCGAACAGGTCGCGGGGAGCAGTCGCGCCCTGGCCGAGTTGAGCGGCGAATTGCACAGCGGCGCCGAGGAC CAGGCCGGCGACACCGCACTGATCCGCGACTCGCTCAGCGAACTGGAAGCGACCATCCAGCAGGTGGCCGGCGATGCCAGCCAGGCCGCGCAGGCCAGTC GCAGCGCCGGCAACGCCGTGGAGCATGGCCAACAGGTCATCGGCTTGAGTCTGGCCGGCCTCCATGCGCTGGTGGGCGAAGTGCAAGGCAATGCGCAGAT GATCGAGCAACTGGCCGAGGAGTCGGCAACCATTGGCGGCGTGTTGACGGTCATTCGCTCGATTGCCGACCAGACCAACCTGCTGGCCCTCAACGCCGCC ATCGAAGCCGCCCGCGCCGGAGAAATGGGCCGGGGCTTTGCGGTGGTAGCCGAGGAAGTCCGCTCCCTGGCCCAACGCACGGCCGGCGCCACCGCCGAAA TCCAGACCCTGATCGCCCGCTTGCAACTGGCCGCGCGCCAATCGGTGGACGGCATGCGTGCCCAGGTCGAACATGCCGAAGCCACCGCCAGCCAGGCCCA GGCAGCCGACGGCGCATTGGATGAAATCGTCGGTGCCATCCAGACCATCGCCGACACGGCGGTCCGCATCGCCGACGTCACCGCCCAGCAAAGCGGCGCC GTCAGCGAGATTCGCGATCACAGCGAGCGGATTCATCAGCTGGGCGGCGATAACCTGCTACGCATCGGCCAAGGCCGGGAACAGGGCGATAACCTACTGG TGCTAGGTGGGCGGCTGCATACCGCTGTGCAGGCCTTTCGGGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCCAGAAACTCTATTAACTACTGTGGCGAGGGAGCTTGCTCCCGCTCGGCTGCCCGGCAATCGTAGAACCTGCCTACTGTTTTTTCCGATACACGGTA TTGAATGGTCTTGGGGCTGCTGCGCAGCCCGATGGGGTTTGTGGCATGGAGCAGGCTACGGAAATTTGTAACGACCCTCTTCATGCTAGGCTCCCGCCCC CTCAAGAAATTGCAAAAGGAGCATGCAATGAGGGTACCTGCGTCGCCACCCGGCGTTTCTGTCGAAGAAAATATGGCAGTGGCATTTCATAAAAAAAACG TTCTGAAAGCTGGATCGGCTTTTATCTACTCGTGGTTTTACACCCAAGTTAGAAATCGCGGACCTTGGGACTACAAGCAACTATCCGCCGAATACGAAGC CTTTGAAAATTTCAACTACGGTGCCACCGGAACCGCAGCAGGCTTCAGCGAAGACGTTCTTTTACGAGCAGCAGGCCTGGCCCAGAGCCGAGCAGGATCA
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| Amino Acid Sequence |
>chemotaxis protein
MRLKLLTNLNTLLLVAVCLGLGATLWWSQIALERPYLLMERYLGLSRQFQGEVARNIEDYLASGDALRLSAATQALESLQKELDQFPPDLAKALRPSLSN LDSFSKTDLLAAGKLAGDPQALLLQAERELSASLDQISQYANGAPAYLPPLFAASQHLGRLSLARDKLVSSGRSELAADVERELTSIRAQAQQLDNLPLL GVTASSQSGSDDFAALMGLETQEKTVAEDAGIALKRELNSLLGRYPAELARTRELIQKRTELSSATHLKIADVQRAVDTLEPAVRAQHGQIQREVRLIQG VMIGLILLIALLIDTLQRRLARTLTHLAPALSTWAEGDFSRDIHVGASNRELQDIEASLNRLRAYLVDLVGTIRVNAEQVAGSSRALAELSGELHSGAED QAGDTALIRDSLSELEATIQQVAGDASQAAQASRSAGNAVEHGQQVIGLSLAGLHALVGEVQGNAQMIEQLAEESATIGGVLTVIRSIADQTNLLALNAA IEAARAGEMGRGFAVVAEEVRSLAQRTAGATAEIQTLIARLQLAARQSVDGMRAQVEHAEATASQAQAADGALDEIVGAIQTIADTAVRIADVTAQQSGA VSEIRDHSERIHQLGGDNLLRIGQGREQGDNLLVLGGRLHTAVQAFRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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