Pseudomonas frederiksbergensis SI8, JZ00_RS20405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas frederiksbergensis strain SI8 contig00012, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGCCTCTTCCATTTCCTTCAAGCGCTTGTCGATCAACTGGCACTTGTCCGGCACATCCTTGCTGGATGTCTCCATGTTCATGGCCTGCAGTTCGTCATT CATCTCTTTTGCTTTGGAGGGGTCCTGCTCGGTGAGCTTGGCAACCTTATCCGCCAGTTGCTCGCGTTTGATGGTCGCCTCCTCAGGTGTGCAAGTGGCC CAGGCGGGCAGGGCGCAGGCGAGAGTGGCGGCGAGGGTGAGTTTGATGAGGGTCTTCATGGCTGGGCCTCGTACTTCTTGTTGGGCTGTTATTCGGTTGA GGCCGGGGTGCACGGGGAAGTTCATTTGATCGTTATGGCGTCGACCTTGGACGTGGCGGATTTCGCGTTCCAGTACCGGTTCATTCCAGACGTACGGCTA GGCCAATCACCTCGAAATATGCACGTTTGGTTGACGTCAAAATGATGGCTCATTAATATCGCGCCACTATTTTGATGTCATTTCTGTCGAGGGATCGAAC
DNA Sequence for Gene
>JZ00_RS20405
ATGTTCTCACCCGCCCCTTGGGCGAGGTTGTGCGTGGCTTTGCTGTGCCTTTCTCCGCTTTCCCTTGCTAACGCCGCCCCGACTCCTGGTGACACTGACC TGATCCGCGAACGCCAGAATCGCTTGCTCGAAGAGCAGCGTCGGCGCCTCGAAGAACTCAAGGACCTGCCGGGCAAGGAGGCGAAGCCTACCCAACCGAC AGCGCCTGCCGATACCCGTTGCTTCCCCATCAAGTCCATCGAACTCAAAGGCGCCGACAGTTTGTCCGCCAGCGATCGGGAACGTTTGCTCAAGCCCTAC ATCGGCCAATGCCTGGGCGTGCCGCAGCTCAACGAACTGCTTAAAGTCATCACCGATCACTACATCGAAAAAGGCCTGGTCACCAGCCGGGCGTATTTGC CGCAACAGTATCTTTCCAGCGGCCATTTGCAGGTGCTGGTGGTCGAGGGGCGACTGGAAGGCCTGAAGGGCGCCGAAAACAGCGGGTTGTCCGAGCGGGA ATTGGCGATGGCGTTTCCCGGCGAGACCGGGGAGTTGGTCAACCTGCGGGAAATCGAGCAACTGGTGGACCAGCTCAACCGCCTGCCGTCCAACCAGGCC AAAATGGAGCTGACCCCCGGCCAGAACGTCGGCGGCAGCCAAGTATTGGTCACCAACGATCCGCAAAAGCCGTGGCGCGCCGGTTTGTCCCGCAGCAACG ACGGCCAGCGCAGCACCGGCGAACAACAGTGGGGCACCAGTTTCGAATGGGACAGCCCGTTGGGGCTGGCCGATCAGTTGATGTTGCGCGGCGGTCACGA TGCCATGACCGACCACCAGCACACCTCCAACAACGCCATGCTGTATTACAACCTGCCCTGGGGCTGGTGGAACTTTAGCTACACCTACAGCCAGAGCGAA TACCGCTCGCAGATCCCGGCCAACGGCTTCAACTTCAAGCAGACCGGCGACAGCCAGAACCATCAGCTGCGCGTCGAGCGGGTGATCCACCGCGACGCCG TGAGCAAAACCTCACTCAACACCGGCCTGGCCTACCTGCGTACCAACAGCTACATCGAGGACAGCAAACTCGATGTCAGCAGCAATCGCCTCAGTGAGGG CCAGTTCGGCATCAACCACGGTCGCCGGGTCGGCAACGCTTTCGTCAACCTGGACTTGGGCGTGCAGCAAGGCATCGGCGCTTTCGATGCCCAGGGCGAC AACGATCCGGGTCCCGGCCAGGCCGATGCCCGCTACCGCAAATACACCGCCACCGCCAGCTATCTGCAACCGTTCAAGGTGTGGGGCGAGTCCTTCAGCT TCAGCAGCCTGATGACCGGCCAGCGCAGTGAAGACGTGTTGTTCAGCCCGCAACGCATGAGCCTGGGCGGACAGTCTTCGATCCGTGGCTACAAGGATCA GTCGCTGTCCGGCGACAGCGGCGGCTACTGGCGCAACGACCTGCGCTGGAGCCGCCCGGTGACCCTGGAATGGCTGCGCCCGGTGTTCGCCGAGTACGGC ACCAGCCTCGGTTACGACCAGGGCGTCATTCGGGGCGATCGCTACAACGGCGATCAGCACGGACGCATGTCGAGCAACTCGTTGGAGCTGTTTGCCCGCG GCCAACACCTGAGCGCCAGCGTCACCTTCGCCCATTCCCTGGAACGTCCGGACGCCCTGACCGAGCGCGAAGCGCCGATCTACTTCCGCCTCGACCTATC CATCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCGCTGCACGAGACCCGATCATGGACGACCGCCAATACGCCTTCCTGGCCCGCCAACCTTCTGCTGCCCTGAAAAACCGCGAGCGGTTCCTCGGCATGC CCAAGCGCGGCCTGGCGTTCCTCTTGGCCAACGTCATGTTCTGGCAACCAATGTGGGCCCAGGCCGAGGGCATCGTCGTCAGCGCGCCTGGCACCGGCCT CGACCGCGCGGGCAACGGCGTGCCCATCGTCAACATCGCCAAGCCCAATGCCAACGGCCTGTCCCACAACCAGTTCAAGGACTACAACGTCGACAGCAAC GGCGTGATCCTCAACAACGCCACGTCCCGTACGCAGTCCACGCAACTGGGCGGGATCATCCTCGGCAACCCGAATCTCAAAGGCTCAGCCGCGCAAACCA TCCTCAACGAAGTCAACGGCGGCAACCCCAGCCAACTGCGCGGCTACACCGAAGTGGCGGGGCAATCGGCCCACGTCATCGTCGCCAACCCGTATGGCAT
Amino Acid Sequence
>ShlB family hemolysin secretion/activation protein
MFSPAPWARLCVALLCLSPLSLANAAPTPGDTDLIRERQNRLLEEQRRRLEELKDLPGKEAKPTQPTAPADTRCFPIKSIELKGADSLSASDRERLLKPY IGQCLGVPQLNELLKVITDHYIEKGLVTSRAYLPQQYLSSGHLQVLVVEGRLEGLKGAENSGLSERELAMAFPGETGELVNLREIEQLVDQLNRLPSNQA KMELTPGQNVGGSQVLVTNDPQKPWRAGLSRSNDGQRSTGEQQWGTSFEWDSPLGLADQLMLRGGHDAMTDHQHTSNNAMLYYNLPWGWWNFSYTYSQSE YRSQIPANGFNFKQTGDSQNHQLRVERVIHRDAVSKTSLNTGLAYLRTNSYIEDSKLDVSSNRLSEGQFGINHGRRVGNAFVNLDLGVQQGIGAFDAQGD NDPGPGQADARYRKYTATASYLQPFKVWGESFSFSSLMTGQRSEDVLFSPQRMSLGGQSSIRGYKDQSLSGDSGGYWRNDLRWSRPVTLEWLRPVFAEYG TSLGYDQGVIRGDRYNGDQHGRMSSNSLELFARGQHLSASVTFAHSLERPDALTEREAPIYFRLDLSI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site