Pseudomonas frederiksbergensis SI8, JZ00_RS19370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00010, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACGGCAAGCTCGGCGTCGGCCTGACCAAGGTTGAACCCGCCGGCCAGTACGCACTGAAACTGACCTTCGACGACGGCCATGACAGCGGACTGTTCACCT GGGACTACCTGTACCAGTTGGCGGTACGCCAGGAAGACCTGTGGAACGATTATCTCGCCGAACTCAAGGCCGCCGGAAAAACCCGCGACCCGAACGAGTC CGTCGTCAAGCTGATGCTCTAGCTCAAGGGCTGGCGCTTTAGGGCGAATTTTCTAGACTCATCTGCTTGAATGCCCGCGCAGCAACGTCAATGACTGGCC TGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGAGCTGGCAAGTTCCCTGCAAAGGAACCGGCGAGTTCCTGGCACACGTTTCCTCATTGCCCTCGA TGCGGAATTTATGGTCACCCCGAGCAGCGTACCTGGTATTGGCCTTGCGGCTTCACGGCACGATCCCGGTACTCGTCTGAAGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>JZ00_RS19370
ATGAGCAACAAGAACAACGATGAGTTGAAGTACCAAGCCTCGGAAAACACCCTTGGCTTGAATCCCGTCGTCGGCTTGCGCAGGAAAGACCTGCTGGCCT CTGCCCGGATGGTGCTGACCCAGACCATCAGACAACCGCTGCACAGCGTCAAGCACGTGGCCCACTTCGGCGCTGAGCTGAGGAAAGTTTTGTTCGGCAA GTCCGAGTTGCAGCCCGCCAGCGATGATCGTCGCTTCGCCGACCCGGCCTGGAGCCAGAACCCACTCTACAAACGTTACCTGCAAACCTACCTGGCGTGG CGCAAGGAGCTGCACGAATGGATCGATGACAGCAGCCTTTCGCCCCAGGACATCAGTCGCGGGCACTTCGTCATCAACTTGATGACCGAGGCCATGGCCC CGACGAATTCGGCGGCCAACCCGGCAGCGGTCAAACGTTTCTTCGAAACCGGCGGCAAGAGCCTGCTCGACGGTTTGTCGCACCTGGCAAAAGACTTGGT GAACAACGGCGGGATGCCGAGCCAGGTAGACATGGGTGCGTTCGAAGTCGGCAAGAGCCTGGGCGTGACGGAAGGCGCCGTGGTCTTTCGCAATGACGTG CTGGAATTGATCCAGTATCGCCCCATCACCGAGCAGGTCCATGAGCGACCGCTGCTGGTGGTGCCGCCGCAAATCAATAAGTTCTATGTGTTTGACCTGA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAGCAACGTGCAAACGTTCATCGTCAGTTGGCGCAACCCCACCAAGGCGCAGCGCGAGTGGGGCCT GTCGACTTACATCGAAGCGCTCAAGGAAGCGGTGGACGTGGTCACGGCCATTACCGGCAGCAAGGACGTCAACATGCTGGGTGCCTGCTCGGGCGGCATC ACCTGCACCGCGTTGCTCGGCCATTACGCTGCGCTGGGGGAAAAGAAGGTCAATGCACTGACCTTGCTGGTGAGCGTGCTGGACACCACCCTGGACACCG ACGTGGCCCTGTTCGTCGACGAGCAGACCCTGGAAGCGGCCAAGCGCCATTCCTACCAGGCCGGCGTGCTGGAAGGCCGCGACATGGCCAAGGTCTTCGC CTGGATGCGCCCCAATGACCTGATCTGGAATTACTGGGTCAACAATTACCTGCTGGGCAACGAGCCACCGGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACGCGGCTGCCGGCGGCGTTCCATGGCGACCTCATCGAGATGTTCAAGAACAACCCGCTGACACGCCCCAATGCACTGGAAGTGTGCGGCACGCCGA TCGACCTCAAGCAGGTCACTGCGGACATCTTTTCCCTGGCCGGCACCAACGACCACATCACGCCGTGGAAGTCTTGCTACAAGTCGGCGCAGTTGTTCGG CGGCAAGGTTGATTTCGTGTTGTCGAGCAGCGGCCACATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGTCGCGCTACATGACCAGCGAGGACATG CCGGCCAAGGCCGAAGACTGGATGGAGAACTCCACCAAGCACACCGACTCCTGGTGGCTGCACTGGCAGGCCTGGCAGGCCGAGCGCTCGGGCAAGCTGA AAAAGGCGCCGACGGTGCTGGGCAACAAGACCTACGTGGCCGGTGAAGCGGCGCCGGGCACTTATGTGCATGAGCGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGATGCAACTCGTCTGCTGCGGGGGTGAGCTTGCTCACGAATACATCCCGCCAGCCGACACTGAGTGCAAGGCCCACAGCGTTGGCGAACATCAAACTC ATGTTCACAGCGGATCCAATGTGGCAGCGAGCTTGGTCCCACGAGGATCGGGGAAAAATGAAAGACAGCGACCCAACCCACAGGGCTTGAAGCATGCCGC AACCGTACATCTTCCGTACCGTCGACCTGGATGGCCAGACCTTGCGCACCGCGGTACGCCCCGGCAAGCCCCATTTGACGCCGCTGCTGATCTTCAATGG CATCGGCGCCAACCTGGAGTTGGTCTTCCCGTTCATCGAGGCCCTGGACCCGGACCTGGAAGTGATCGCCTTCGATGTGCCCGGCGTCGGCGGTTCGTCG ACACCGAGCCGACCGTATCGCTTTCCTGGCTTGGCCAAGCTCACCGCGCGGATGCTCGATTACCTGGACTATGGGCAGGTCAACGTGATCGGCGTGTCCT
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDELKYQASENTLGLNPVVGLRRKDLLASARMVLTQTIRQPLHSVKHVAHFGAELRKVLFGKSELQPASDDRRFADPAWSQNPLYKRYLQTYLAW RKELHEWIDDSSLSPQDISRGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDLVNNGGMPSQVDMGAFEVGKSLGVTEGAVVFRNDV LELIQYRPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRSNVQTFIVSWRNPTKAQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAALGEKKVNALTLLVSVLDTTLDTDVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLTRPNALEVCGTPIDLKQVTADIFSLAGTNDHITPWKSCYKSAQLFGGKVDFVLSSSGHIQSILNPPGNPKSRYMTSEDM PAKAEDWMENSTKHTDSWWLHWQAWQAERSGKLKKAPTVLGNKTYVAGEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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