Pseudomonas frederiksbergensis SI8, JZ00_RS17960
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00009, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCCTGGGCATCGCCACGTTCATTGCCCGCCGCAAATTCGCCAAGACCGAGCGCGAGGCCGGTAAAGCAGCGCTGGTGCTGGGGCTGTGCTTCATCTC CGAAGGTGCGATTCCGTTCGCCGCCAAGGACCCGCTGCGGGTGATCCCGGCCAGCATCGCCGGCGGCGCGCTGACCGGGGCGCTGTCGATGTACTTCGGC TGCAAACTCATGGCGCCTCACGGCGGGCTGTTCGTGATGCTGATCCCCAACGCCATCAATCACGCGCTGCTGTACCTGTTGGCGATCGTCGCGGGAAGCC TGGTGACGGGCGTGGCGTATGCGCTGCTCAAGCGGCCGGAAGCGGTGGAAATGGCGTTGGAGCCGGCCAAGGCCTGAGCCCACTCCGGTTCCCCTGTGGG AGCCTGCTCCCACAGCTGGTTTTTGGAGCAGGCATAAAATCCCTGTCACACCCACTTCATACAGCCATGCTTAAGTTTTCCCATTTCAAGGGAGAACACC
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| DNA Sequence for Gene |
>JZ00_RS17960
ATGAGCGAATTCGATCTGGGCCGTCGCCGTGTCATGCAAGTCGTCGGCGCTGGTTTATTGCTGCCCGGGCTGGCTCCGGCGGTGATCGCTTCGGTCAAAG ACCGGCCAGTGCTGACCGAAGGCGTGCAGTCCGGCGACTTGCAGGGCGACCGGGCGATGATCTGGAGTCGCAGCGACCGCCCGGCGCGGATGGTAGTGGA ATGGGACACCCGCAGTCAGTTCTCCAATCCCCGGCGCTTTGTCTCGGCGCTGGCCGACAGCCGCAGCGATTTCACCGCCCGGGTCGAACTCACCGGTTTG CCCCGCGACCAGGCGATTTTCTATCGCGTGCATTTCGAAGACGCCCAGAGCGGGGTAGCCAGCGAACCTTGGCTCGGCCATCTGCGCAGCGTCCCGCAGT TCAAGCGCAACATCCGTTTTGTCTGGAGCGGCGATACCGTCGGCCAGGGCTTCGGCATCAACCCGGACATCGGTGGGATGCGCATCTACGAAGCCATGCG CCTGCGCCTGCCGGATTTCTTTATCCACAGCGGCGATACCATCTACGCCGACGGCCCGGTGCCGGCGCAGATTACCACCGAGGGTGGCCGTATCTGGCGC AACCTCACCACCGAAGCCAAGAGCAAGGTCGCCGAGACTTTGGACGAATATCGGGGCAACTACCGCTACAACCTGATGGATGAAAACGTGCGTCGCTTCA ACGCCGAAGTGCCGCAGATCTGGCAATGGGACGACCACGAGGTCGTCAACAACTGGTCGCCGGGCAAGCAACTGGACGAGCGCTACCAGACCAAGGATAT CCACAGTTTGGTCGGCCGAGCGCGGCAGGCCTGGCTGGAATACGCGCCGATGCGCCTGCAGAAGGCCGATGGTGGCGGACGCATCTACCGTAAGCTTGGC TACGGGCCGATGCTGGATGTGTTCGTGCTGGACATGCGCAGTTACCGCGAAGCCAATGACGCCAACCTCGGCGCGGCGAAACCGTTCCTCGGGCGCGAGC AGTTGAACTGGCTCAAGCGTGAATTGAAGCAGTCCCGGGCGCAGTGGAAAGTCATCGCCGCCGACATGCCCATCGGCTTGGGTGTGCCGGATGGCGAAGT CAGCCCCGGCGTGCCGCGCTGGGAAGCGGTTGCCAACGGTGACCCGGGCGAGGCCCAGGGCCGTGAGTTGGAAATCGCCGAACTGCTCGGCTACCTGCGC AAGCATCAGGTGCGCAACTATGTCTGGCTCACCGCCGATGTGCACTATTGCGCCGCCCATCACTACCATCCCGAACACGCTGCGTTCCAGGATTTCGAAC CGTTCTGGGAGTTCGTCGCCGGGCCGCTGAATGCCGGAAGTTTCGGGCCCAATGCCCTGGACAAGACCTTTGGCCCCGAAGTGGTGTTCCAGAAAGCCCC TCCGGCCCAGAACACCTCGCCGTTTGCCGGCTACCAGTTTTTTGGCGAGGTGAACATCGACGGGCAGAGCGGGGAAATGAGCGTGGTGCTGCGGGACCTG GAAGGCGTGGCGGTGTTCGAGAAGAAGCTACAACCGGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCCTGTGGGAGCGGGATTGATGTTGTGGTCAGGATCAGTACACATCCCGCCGATACCGCCCCTGCTCGATCAACTTCTCCACTTCCTCGCGGCCCAG CACCAGGTTGAGCACGTGATCGACCCCTGACGCCATCCCTTGCAGGCTCCCGCAGACATAGATCACCGCGCCGTCAGCCAGCCATTGCTTGAGCAGTGCC GCCGATTCCAGCAGGCGGTCCTGGACGTAGATTTTCTTTTCCTGATCCCGGGAGAAAGCCAGGTCCAGGCGCTCCAGATCGCCGCAGGTGACCCATTCCT GCAGCTCATCGCGGCAATGGAAATCGTGTTCGCGGTTGCGCTCGCCAAACAGCAGCCAGTTGCGCTGCATGCCCTCGGCGACGCGAGCCTTGAGCAAGCT GCGCAAGCCGGCCAGGCCTGTGCCGTTGCCCAGCAGGATCATCGGCACGCCTTGCGGCGGCAAATGGAAGCTGCTGTTGCGCCGCACCCGCAGACTGATA
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| Amino Acid Sequence |
>alkaline phosphatase
MSEFDLGRRRVMQVVGAGLLLPGLAPAVIASVKDRPVLTEGVQSGDLQGDRAMIWSRSDRPARMVVEWDTRSQFSNPRRFVSALADSRSDFTARVELTGL PRDQAIFYRVHFEDAQSGVASEPWLGHLRSVPQFKRNIRFVWSGDTVGQGFGINPDIGGMRIYEAMRLRLPDFFIHSGDTIYADGPVPAQITTEGGRIWR NLTTEAKSKVAETLDEYRGNYRYNLMDENVRRFNAEVPQIWQWDDHEVVNNWSPGKQLDERYQTKDIHSLVGRARQAWLEYAPMRLQKADGGGRIYRKLG YGPMLDVFVLDMRSYREANDANLGAAKPFLGREQLNWLKRELKQSRAQWKVIAADMPIGLGVPDGEVSPGVPRWEAVANGDPGEAQGRELEIAELLGYLR KHQVRNYVWLTADVHYCAAHHYHPEHAAFQDFEPFWEFVAGPLNAGSFGPNALDKTFGPEVVFQKAPPAQNTSPFAGYQFFGEVNIDGQSGEMSVVLRDL EGVAVFEKKLQPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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