Pseudomonas frederiksbergensis SI8, JZ00_RS17525

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas frederiksbergensis strain SI8 contig00009, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGGCCCAGTTTCATGTTGACGCTAATGTTGCCAAACCAGCTATTCATCAAATTCCTCCAGGAACGTTGCGCTGCTTATCGTCGGTTGGCTGGAAGATTGT TGTTGTTAAGAGCCAGCAAAAACGTTTAACGGAGCTGTATCGGCGGCTGGCCCTGAATCTGAAAATTTTTTTACCGGGACGAAAAATGACAGGCAAAAAA AAGCCCGCGGGAGAGCGGGCTAAAACCTTAGTTTCTTGAATGAGCGAGGGGACTGTATCGGATTGCATGAAGGCGTGGGGTGAAGAAAAGTTCATGCGGT TCAGCTTGTTGCTCTCTTCGAAAAGTATTCATCAGCGAGGTGATTTCGGACGTGTCCTGTGAGGCATGTCTCTTTTTTGAGTCAAAAAATGTCCGATTTC TGAACCGAACGCGATCTGCAGGGTCTGGTGTGCGCGCAGAAGGCTGTCCGATTTGGCCTGCGCCGCAATTTTGCTGTCGTTTTGTATCGAGGGATCGAAG
DNA Sequence for Gene
>JZ00_RS17525
ATGTCCGTGTATGCCTTAGGGACAAGGCTTGTCGTCGCGTCGCTGTATTTTCTGGCGATGGACATTGCCGTCGCCGCGCCGACCCCCGGCGACACGGATC TGATCCGCGAGCGCCAGGACCGTCTGCTCGAAGAGCAGCGCCGGCGCCTCGAACAGCTCAAAGAGTTACCGGGCAAACCCGCCACACCCCAAGCCCCCGT CGCGCCGACCGACAACCGTTGCTTCCCGATCAAGACCATCGAACTCAAGGGCGCCGATGCCCTGTCAGAGCGTGAGCGCCAACGCTTGCTCGCCCCCTAC ATCAATCAATGCCTGGGCGTGCCGCAGCTTAACGAGTTGCTCAAGACCATTACCGATGCGTACCTGGAAAAGGGCCTGGTCACGAGCCGTGCCTATTTGC CGCAACAGGACTTGTCCAGTGGGCATCTGCAGGTGCTGGTGGTCGAGGGACGGCTTGAAGGACTAAAGGGCGTCGAGGGCAGTGGCTTGTCCGAGCGCGA ACTGGCCATGAGTTTTCCCGGCAAGCCCGGCGAATTGCTCAACTTGCGGGACATCGAGCAAATGGTTGATCAGTTGAACCGTTTGCCCTCCAACAGCGCC CGGATGGAGCTGACGCCGGGACAGAATATCGGCGGCAGTGAAGTGCTGGTCAGCAATACCTCGCAAAAACCTTGGCGCGTCGGCCTGTCACGGCATAACG ATGGGCAAAAAAGTACCGGCGAGCAGCAATGGGCTACCGCCTTCGATTGGGACAGTCCCTTGGGCCTTGCCGATCAACTGGCCCTGCGCGGTGGCCACGA TGCCATCAGCGACCATCAGAAGACTTCCCGCAATGCCATGCTCTATTACAACCTGCCGTTTGGCTGGTGGAACCTGAGCTACACCTACAGCCAAAGCGAG TATCGCGCGCTGGGCCAGGCCAACGGCTTCAACTTCAAGCAGAGCGGCGACAGCCAGAACCATCAGTTGCGCCTGGAACGGGTGGTCCACCGTGACGCGG TGAGCAAGACCTCGCTCAACACAGGCCTTTCCTACCTGCGTACCAACAACTTCATCGAAGACAGCAAGCTCTCCGAAAGCAGCAATCGCATCAGCGAGGC GCAGTTCGGCATCAACCATGGGCGGCGGATCGGCAATGCCTTCGTCAACCTCGACCTGGGCCTGCAAAACGGTATCGGCGCCCTCGACGCCCAGGGCGAC CGCGACCCTGGGCCTGGCGTGCCGGATGCGCGATACCGCAAATACACCGCCACCCTCAGCTACCTGCAGTCCTTCGAGTTGGGCGGCGAATCCTTCAGCT TCAGCAGCCTGATGACCGGCCAGCGCAGCGAGGACGCGTTATTCAGCCCGCAACGCATGAGCCTGGGTGGGTTGTCTTCGGTCCGCGGCTACAAGGACCA GACGCTGTCCGGCGACAGCGGCGGCTACTGGCGCAACGACCTGCGCTGGAGCCGTCCGGTGACGCTGGAGTGGCTGCGTCCGGTGTTCGCCGAGTACGGC ACCAGCCTCGGTTACGACCAGGGCGTCATTCGGGGCGATCGCTACAACGGCGACCAGCATGGCCGCATGTCGAGCAACTCGCTGGAACTGTTCGCCCGCG GCCAGCACTTGAGCGCCAGCGTCACATTTGCCCACTCCCTGGAACGTCCGGACGCCCTGACCGAGCGCGAAGCGCCGATCTACTTCCGCGTGGATGTATC CATCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCTGTTTGCAAAGAGACCTGATCATGGACGACCGCCAATACGCCTTCCTGGCCCGCCAGCCCTCTGCTGCCCTGAAAAACCGCGACGCCTTCTGGGGCA TGCCCAAGCGTGGCCTGGCGTTCCTGTTGGCCAACGTCATGTTCTGGCAACCGCTGTGGGCCCAGGCCGACGGTATCGTGGTCAGCGCGCCGGGCACCAG TCTCGGTCAGGCGGGCAACGGTGTGCCCGTCGTCAACATTGCCAAGCCCAACGGCAGTGGGCTGTCTCATAACCAGTTCAAGGACTACAACGTCGGCAGC AACGGCGTGATCCTCAACAACGCCACCAACCCTGCCCAGGCCACGCAACTGGGCGGGATCATCCTCGGTAATCCGAACCTCAAGGGCTCGGCCGCCAAGA CCATCCTCAATGAGGTCAACGGTGGCAACCCCAGCCAGTTGCGTGGCTACACCGAAGTCGCGGGGCAATCGGCCCACGTCATCGTCGCCAACCCTCATGG
Amino Acid Sequence
>ShlB family hemolysin secretion/activation protein
MSVYALGTRLVVASLYFLAMDIAVAAPTPGDTDLIRERQDRLLEEQRRRLEQLKELPGKPATPQAPVAPTDNRCFPIKTIELKGADALSERERQRLLAPY INQCLGVPQLNELLKTITDAYLEKGLVTSRAYLPQQDLSSGHLQVLVVEGRLEGLKGVEGSGLSERELAMSFPGKPGELLNLRDIEQMVDQLNRLPSNSA RMELTPGQNIGGSEVLVSNTSQKPWRVGLSRHNDGQKSTGEQQWATAFDWDSPLGLADQLALRGGHDAISDHQKTSRNAMLYYNLPFGWWNLSYTYSQSE YRALGQANGFNFKQSGDSQNHQLRLERVVHRDAVSKTSLNTGLSYLRTNNFIEDSKLSESSNRISEAQFGINHGRRIGNAFVNLDLGLQNGIGALDAQGD RDPGPGVPDARYRKYTATLSYLQSFELGGESFSFSSLMTGQRSEDALFSPQRMSLGGLSSVRGYKDQTLSGDSGGYWRNDLRWSRPVTLEWLRPVFAEYG TSLGYDQGVIRGDRYNGDQHGRMSSNSLELFARGQHLSASVTFAHSLERPDALTEREAPIYFRVDVSI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site