Pseudomonas frederiksbergensis SI8, JZ00_RS16475
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00008, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAACGTCACCGTGACGCAGTCGTTCGACATTGAAGCCATCCAGCAAAGCGTCGCCGATGCCACACGGGTCGGAGCGCAAGTGACTTCGCCCCACGCTCC GGAGCTCAATCCAGCCCAGCCGAAACCGACTGACTGGTCCGGCGTCGGGGTCGAGGACGGCGGCTTGTTGCTGGTGGACCAGGGCGGCACGCGTGCCAAC GGCCCAGGCAATGGCGACGGCGATGCGGCTGCCCAGGCCCAGGACGCCGACAGCGATCGGGAACTGGCCGGTAACGTCTGCGCCGATGGCGGCGTATCGG GTGGAGGCGCCTGTGCGGCCTACCCGCCGCAGACCGTGTTCGTCGTGCGCGGCGGCGTGCGCTTGCCAGGTCCAGGTCTGGCCATGCGTCCCTGATCCCC ACTTTTCCCTTTGAACGAGCCCCTTGGCCGCGTCCCCGGACGCGGTCACGGGCTCAGGCAACCCGCATTCTTCGAGACATATTCAATGCATAACAAATTA
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| DNA Sequence for Gene |
>JZ00_RS16475
ATGTCCTGCGCCGCTGGTCTGGCGTTGTTGTCCACTTCCCCGGCCTGGGCGGCGACCCTGCCGGCGCGCCCGATCCCCGATGCCGGCCGTATCCTGCAGG AGCTGCCGGTTCCCCAGCAGGAACTGCCGCAAAGCATTCGCCTGGATGTAGAAGCACCGCAACCGGCGCAGGAAAAAGTCGGCGGCGCCAAGGTCCAACT CAACGCCGTCCATTTCACCAACAACACCCGTATCGACGAGGCCAGCCTGCAACGTGTCGTCGCGCCGGCCATCGGTAAGGCCCACGACCTCGACGAGCTG CGGGAAGTCGCCCGGCAGGTCACGCTTTACTACCGTGAGCACGGCTACCCGTTTGCGCGTGCCTACCTGCCGGCCCAGCGCATGGCCAAAGGCGAGCTGA CCATCGCGGTGATCGAAGGGCGTTATGGCAAAGTCACCGCCGTCAACGACGATGCGAAACTGGCCGCACAGGCGCAGCCGTTCCTGGACGACTTGAAGCC GGGCGAGGTGATCGAGCGGGATCGCCTGGAGCGCAGCATCCTGGTGCTCTCCGACCTGCCCGGCGTGGCGGTTCGTCCGGTCATCCGCCCGGGTGACGAA CTCGGTACGGGCGACCTCAACGCCCAGGTGAGCAAAACCAAGGCCTTCGAAGGCAAGGCCACGCTGGACAACCACGGCAACCGTTACTCGGGGCGCAACC GCCTGACGGTGCAAGGTGACTGGAACAGCCCGATGATGCTGGGCGACAAGCTCAGCGCCGCCGTGATGGCCACCGATGAAGAACTGTATTTCGGCAGCCT CGGCTACTCGATGCCGTTGGGCACGTCCGGCCTGCGTGGCAACGTCGGTTATGCCCAGAGCGCTTATGACCTGGGCGAGGAATTCGCCGACCTGGGGGCC ACCGGTACCGCCGAGGTCAGCAGCATCGGCTTGAGTTATCCGCTCATTCGCAGCAACCAGGCGAACCTCATGCTGGCCGGCCAGTACCAGCACAAAGAGC TCGAGGACAAATACGAAGTGCTGGGCCTGAGCTTTGAGAAAAGCAGCAACTCGCTGCCCATCAGTTTGCAGTTCGACGTCAGGGACACCTTGCTCGGCGG CGGCATCACCTACGGCGGCGCGACGCTGACCTACGGTGACCTGAAACTCGATTCGGCCCTGCGCGAAGGCGACCGTCAGACGGCCCAGACCGAAGGCCAA TTCAGCAAAGTCAACGTCGACCTCGCCCGCCTGCAAGCGCTGCCTGCCAACTTCACGTTGTTCGCCCGTTTCCTCGGCCAATGGAGCCAGGACAACCTCG ACTCGTCCGAAGATTTCAGCCTCGGCGGCGTCGATGGCGTGCGGGCTTATCCACAGAGCGAAGCGTCAGGCGACGAAGGCATGCTGACGCAGATCGAACT TCGCTACCCGATCGACAAGCTGACGCCTTACCTGTTCTGGGACGCCGGCAAAGTGCGCATCAACCACAACGAATGGGCCGACGAGGAAAACACCCGCAGC CTCTCCGGCGGCGGTGTGGGTTTGCGCGCTCAATACGGCCAGGTTTCGTTCGACGCAACGGTCGCGTGGCGTCACTCCGGCGGTGAAGCGCAGAGCGACA CGCGTCAGGAGAATCCGCAGTTACTGGCTCAGATTGGCTACCAGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGGCTGCTGCTCATTTAAAGAACTCAACAAACCCGTGGCGGTTCGGCACAGTTAGTCGAGTACATCTCCTTTGTGGCGAGGGGGCAAGCTCCCTCGCCA CGGTCGAGTGATCCGCTCGGTCCCTCTCGCCTTGGCTGACGTCCAGACGCCGTCACCTCTTGTTTAATACTCCTCATCCCCCGCCAACAATGTCCCGCCC CGAACGGGGACGACCGTTTATCGCCCATTAAAAATTTGATAGCTTCAGTTCTCGCCTTACCTGCCGTTATATCGACTTGTTGCCGGCCCGATACGTGTTT CCTCGCCTGGCAATTTCGCGACAGTGACCTGGCTAAACACAACAAGAGACCTGGCGAATGGACAACGGACGACATGAAAGGCAGGCAGCGGCGGCGTCCG AGTCGCTGCCGCATATTCTGCTGATCGACGATGTCCCCGAGGACATCCGCGCCACGCTCATCCTGTTGAAGACCCAGCCCTGGCGCATTTCCCTGGCCAG
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| Amino Acid Sequence |
>hypothetical protein
MSCAAGLALLSTSPAWAATLPARPIPDAGRILQELPVPQQELPQSIRLDVEAPQPAQEKVGGAKVQLNAVHFTNNTRIDEASLQRVVAPAIGKAHDLDEL REVARQVTLYYREHGYPFARAYLPAQRMAKGELTIAVIEGRYGKVTAVNDDAKLAAQAQPFLDDLKPGEVIERDRLERSILVLSDLPGVAVRPVIRPGDE LGTGDLNAQVSKTKAFEGKATLDNHGNRYSGRNRLTVQGDWNSPMMLGDKLSAAVMATDEELYFGSLGYSMPLGTSGLRGNVGYAQSAYDLGEEFADLGA TGTAEVSSIGLSYPLIRSNQANLMLAGQYQHKELEDKYEVLGLSFEKSSNSLPISLQFDVRDTLLGGGITYGGATLTYGDLKLDSALREGDRQTAQTEGQ FSKVNVDLARLQALPANFTLFARFLGQWSQDNLDSSEDFSLGGVDGVRAYPQSEASGDEGMLTQIELRYPIDKLTPYLFWDAGKVRINHNEWADEENTRS LSGGGVGLRAQYGQVSFDATVAWRHSGGEAQSDTRQENPQLLAQIGYQF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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