Pseudomonas frederiksbergensis SI8, JZ00_RS14935
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00007, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCCAGCTAGGTCGCGGCCTACAGAGCAGTTCCACGTTTCGCACACAAATTACGCACAGGCTTATCCACAGGCAGCACGTTGATTCATGTCCAAAAACGC ATTATCTTGTAGCCCGCCGCGTAAAAAACCCTACATGTAGGGTTTCAGGCCAAAAACCAAACACAAGTCGGATAGAGAATTCAAGCGCTTTTCTTGCCTC TGTCCTCCTGCAACACCGCAGTTTTCCAAGTCCAGAACCGCCCCTGCGGATGGCAACCGTTTCCCAGGTCGAAAACGACCGGAACGGTACGGGTGTTGCA GTCCTTTGCTGCCACCTTAGCAAACCCGGTCTAGAGCCCAGGCTCGCGACCCAAGAACTTCGGATGGACGCGACGCCACAGGCCCGCGTCCTACTGTCCC GAAGTTGTTATACCCGGCGCCAGTCGGTTGTAGTGCTTCAGGACGGAACGGTGGGCACCGTGATGGTGCCCAAATAAACATAGAGAACGTGGAGACACCC
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| DNA Sequence for Gene |
>JZ00_RS14935
ATGCACACCGACACAACTCGCGAGAACCCGCAGGGCACCGCGCCGCTGGCCGCCGATTCGAGCCCGGATCTGTCCGCCACCGCGCCGGGTCAACTGCGCG TGATCAAGCGTAACGGCACTGTCGTTCCCTACACCGATGACAAGATTACCGTCGCCATCACCAAAGCGTTCCTCGCAGTTGAGGGCGGCACCGCTGCCGC CTCGTCGCGAATCCACGACACCGTCGCCCGCCTGACCGAACAGGTCACCGCGACCTTCAAGCGTCGCATGCCGTCGGGCGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTAGCTCGCGACTACGTGATCTACCGTGACTCCCGCGCCAAGGAACGTGCTA CCCGTTCCCCTGCCGACGCACCGGTCCAGGCCCACCCTTCGATCCGCATCGCACGCGCCGACGGCAGCCTGGCGCCGCTGGACATGGGCCGCCTGAACAC CATCGTCACCGAGGCCTGCGAAGGCCTGGAAGAAGTCGATGGCGACCTGATCCAGCGCGAAACCCTGAAGAACCTCTATGACGGCGTCGCCCTGAAGGAC GTCAACACCGCACTGGTGATGACCGCGCGGACCCTGGTGGAACGCGAGCCGAACTACTCGTTCGTGACCGCACGCCTGCTGATGGACACCCTGCGCGCCG AAGGCCTGAGCTTCCTGGAAGTCGCCGAGAGCGCGACCCACCACGAAATGGCCGACCTCTACGCCAAGGCCCTGCCGGCCTACGTCGCCAAGGGTATCGA GTACGAATTGCTGAACCCTGTCCTGGCCGAATTCGACCTGGAAAAACTCGGCAAGGCGATCAACCACGAGCGCGACCAGCAGTTCACCTACCTGGGCCTG CAAACCCTCTACGACCGTTATTTCATCCACAAGGATGGCGTGCGCTTCGAACTGCCGCAGATCTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCGAAG AGAAGCAGCGCGAAGACCGTGCGATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGGCCTCGACCCCAACCTTGTTCAACGCCGGCACCCTGCG TCCGCAGCTGTCGAGCTGCTACCTGACCACCGTTCCGGATGACCTGTCGGGCATCTACGGCGCCATCCACGACAACGCCATGCTATCGAAATTCGCCGGT GGCCTGGGCAACGACTGGACCCCGGTTCGCGCATTGGGCTCGTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTCGTGCCGTTCCTCAAAGTGGTCA ACGACACCGCCGTCGCGGTCAACCAGGGCGGCAAGCGCAAGGGCGCGGTCTGCGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAGCT GCGCAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCCGACCTGTTCATGAAGCGCGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCATCCGAAGTGCCGGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTGACCGAGTACA ACAAGATCAAGCTGTTCAAAGTCGTCCAGGCCAAAGACCTGTGGCGCAAGATGCTCTCGATGCTGTTCGAAACCGGCCACCCATGGCTGACCTTCAAGGA CCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTCCACAGTTCGAACCTGTGCACCGAGATCACCCTGAACACCAACAAGGATGAGATCGCG GTCTGCAACCTCGGCTCGATCAACCTGCCGAACCACATCGTCGATGGCAAGCTGGACACCGCCAAGCTGCAACGCACCGTGAACACCGCCGTGCGCATGC TCGACAACGTGATCGACATCAACTACTACTCGGTGCCGCAAGCGAAGAACTCGAACTTCAAGCACCGTCCGGTCGGCCTGGGCATCATGGGCTTCCAGGA CGCTTTGTACCTGCAGCACATCCCGTACGGTTCGGACGCTGCGGTCGAGTTCGCCGACAAGTCCATGGAAGCGGTCAGCTACTACGCGATCCAGGCTTCC TGCGACCTGGCCGACGAGCGCGGTTCGTACGAGACGTTCCAGGGTTCGCTGTGGTCCAAGGGCGTCCTGCCGCTGGACTCGCAACAGATCCTGATTGCCC AGCGCGGCGAGAAGTACATCGACGTCGACCTGAAGGAAACCCTGGACTGGGCACCGGTTCGCGCCCGTGTGCAGAAAGGCATCCGTAACTCGAACATCAT GGCCATCGCACCGACCGCCACCATCGCCAACATCACCGGCGTGTCGCAGTCGATCGAACCGACCTACCAGAACCTGTACGTGAAATCGAACCTGTCGGGC GAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTCAAGGCCCGCGGCCTGTGGGACTCGGTCATGATCAACGACCTCAAGTACTACGACGGTTCGG TGCAGCAGATCGAGCGCATCCCGCAAGAACTCAAGGAGCTCTATGCCACCGCGTTCGAAGTGGACACCAAGTGGATTGTCGATGCCGCCAGCCGTCGCCA GAAGTGGATCGACCAGGCTCAGTCGCTGAACCTGTACATCGCCGGCGCCTCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCTTGGTACCGTGGCCTG AAGACCACCTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCGTCAACACCGGCAAGCTGAACGCGGTTTCCGCTGGCGGCAACCACG GTGACGACTCGGTCCTGGCTGCTCCAGCCGGACCGGCGCCAGTGCCAAAGGCCTGCGCGATCGACGAACCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGAGCGGGTAGGTGTTGCGAAACTCCTGCTGAAGAAGCCCCCGATAGGCCACTGGTTTATCGGGGGTTTTCTTTTGCCTGGGATAAGGTGCTGACTGA CCTACCGCTTTCGCGAGCCGGCTCGCACACACTTGTCCTGCGTACACATACGCCCTGCTCGCGAAGAGGTCGAGACAGGCAACACAGAATAGCCGCGCAC AAAAAAGCCCCTCTTTCGAGGGGCTTGTTGTGTAGCCTTCAAGCAACCATCGGCATCAAGCCATCTGAATGATGGTCTGCATGATGGTGCTCTGGGTGGA GATGGTCTTGGCGTTTGCCTGGTAGTTGCTTTGCGCCTTGATCAACTCGACCAGTTCGTTGGTCAGGTTGACGTTGGACTCTTCCAGGGAGTTGGAGACG ATCGAACCCAGGGTGCCGGTTTGTGGCGCGTCGTAGCCTGGTATACCCGAAGCGAAGGTTTCTTTCCAGCTGGTGCCGCCTACTGGCTGCAGACCCTGCT
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MHTDTTRENPQGTAPLAADSSPDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDSRAKERATRSPADAPVQAHPSIRIARADGSLAPLDMGRLNTIVTEACEGLEEVDGDLIQRETLKNLYDGVALKD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMADLYAKALPAYVAKGIEYELLNPVLAEFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQAS CDLADERGSYETFQGSLWSKGVLPLDSQQILIAQRGEKYIDVDLKETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTVNTGKLNAVSAGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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