Pseudomonas frederiksbergensis SI8, JZ00_RS14445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00006, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTCACGCAGATTGATCGGACTTGCTTGAAGCTTAGACGGTGCTTGGCATGGGGGGAGGGAAATTGTGGAGGCCTGGTCGGGCAGGGGAAGCGTGGAGAC TTTTGTGGCGAGGGGATAAATCCCCTCGCCACAGGTTTCTTTTTCAGATCCCCATAACTTCAGGCCAGAGCCTTGAGTTAGAGCCATCAACCCATGCCAA CACATGACGCTGCACCATCACTGTGCAATACTCGGCGCCGCTTCAAAAAGGCGGTTAGTTCAGACAATCCCACCTGATAAAGCCATTGTCGTCTCGGGTA TTACCTGAATTAACCTGCTTTTACAGTGAAACTCTCTATCCCTGGCTTTTTATACTGCACGGCCCGCTGATCTTGAGGATTTTTCCTACAGGACGGTCTG CCCACAAGGCAGGCCCGGTTTCGGCAATGCTCGCAGGCCACCCGCCCGCGGCTTTGGAGACTCGGTGGTCAATCCAATAACAAGACGAGGTTGTATCCCT
|
|
| DNA Sequence for Gene |
>JZ00_RS14445
ATGCCAGTCGGCAAACATCTGCCCCATGGCGAGACCGCGCAGGGTGGTCCGCTCAAACGTGAGCTCGGCGAGCGGCATATCCGCTTGATGGCGCTTGGCG CCTGCATCGGTGTCGGGCTGTTCCTCGGTTCGGCCAAGGCTATCGAGATGGCGGGACCGGCGATCATGCTGTCCTACATCATCGGTGGCCTGGCGATCCT GGTGATCATGCGCGCCCTCGGCGAAATGGCCGTGCACAATCCGGTGGCCGGTTCGTTCAGCCGCTACGCCCAGGATTACCTCGGCCCGCTGGCAGGCTTC CTGACCGGTTGGAATTACTGGTTCCTGTGGTTGGTCACTTGCGTGGCCGAGATCACCGCGGTGGCGGTATACATGGGCGTCTGGTTCCCCGATGTCCCCC GCTGGATCTGGGCCCTGGCCGCACTGGTGAGCATGGGCTCGATCAACCTGATCGCGGTCAAGGCCTTCGGTGAATTCGAGTTCTGGTTCGCCCTGATCAA GATCGTCACCATCATTGCCATGGTCATTGGCGGCGTCGGCATCATTGCCTTTGGCTTTGGTAACGACGGCGTCGCCCTGGGTATCTCCAACCTGTGGACC CATGGCGGTTTCATGCCCAACGGCGTGACGGGCGTGTTGATGTCCCTGCAAATGGTGATGTTCGCCTACCTGGGCGTGGAGATGATCGGCCTGACCGCCG GTGAAGCGCGCAACCCGCAGAAAACCATCCCCAACGCCATCGGCTCGGTGTTCTGGCGGATTCTGCTGTTCTACGTCGGGGCGTTGTTCGTGATCCTGTC GATCTACCCATGGAACGAAATCGGCACCCAAGGCAGCCCGTTCGTGATGACCTTCGAGCGCCTGGGCATCAAGACCGCCGCCGGCATCATCAACTTCGTG GTGATCACCGCCGCGCTGTCATCCTGCAACGGCGGAATCTTCAGCACCGGCCGCATGCTCTACAGCCTGGCGCAAAACGGCCAGGCCCCGGCCGGCTTCG CCAAGACCTCCGCCAACGGCGTGCCACGCCGCGCACTGCTGCTGTCCATTGCGGCCCTGCTGCTGGGCGTGCTGCTCAACTACCTGGTGCCGGAAAAAGT CTTCGTCTGGGTGACGTCCATCGCCACCTTTGGCGCGATCTGGACCTGGGTCATGATCCTGCTGGCCCAACTCAGATTCCGCAAAGGCCTGAGCGCTTCC GAGCGTGCCGCGCTGAAATACCGCATGTGGCTGTACCCGGTCAGCTCTTATCTGGCGCTGGCGTTCCTGGTACTGGTGGTGGGCCTGATGGCGTACTTCC CCGACACGCGCGTGGCGCTGTATATCGGCCCGGCGTTCCTGGTGCTGCTGACGGTGTTGTTCTACACCTTCAAGTTGCAGCCGACCGCCGAGGCACAGGG TTCGATGCGATCGGTTTCGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTCAAGCGCGATGTAAAACAAAGCCCCGGTCAGATGACTGGGGCTTTTTTGTAGCTATTAGCGCGACCGTCCGTCGGACTCGTGGCCCGACCTGTAAGA TCTGACAGTAGACCGCGACAGGGCTGTCGCCTAGCTTGAAAACCCGCCAATAGGGGAACGGCTAGGTATCAGGATGAATGGGATTTCTGCGTTGATGGCT ATCGCACTGGTCAATGGACTGATCCATGGCCAGGTTTTTTTTCTCTTGCACGACGCCGTTGGGCTGGTTCAGGCGAGCAGCAACTTTGCTGCGTTCTGCG TGGCTGCGGTGTTTTCGTTTTATGTGAGTGGGCTCTACATCTTCCGACCCGGGGAGTCGTGGCGCGGTTATCTATTGGGTAATGGCGCGATGGGCGCGCT GAGTTATGGCTTCGGCGCGATCGGCGATGCGCTGGAATTGCCTGGGTGGATAGCGGTCGCTTTGTCTTTGTATTTCACGCTGAACCTGGTGATTGGGTAT
|
|
| Amino Acid Sequence |
>D-alanine/D-serine/glycine permease
MPVGKHLPHGETAQGGPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYIIGGLAILVIMRALGEMAVHNPVAGSFSRYAQDYLGPLAGF LTGWNYWFLWLVTCVAEITAVAVYMGVWFPDVPRWIWALAALVSMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGVALGISNLWT HGGFMPNGVTGVLMSLQMVMFAYLGVEMIGLTAGEARNPQKTIPNAIGSVFWRILLFYVGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFV VITAALSSCNGGIFSTGRMLYSLAQNGQAPAGFAKTSANGVPRRALLLSIAALLLGVLLNYLVPEKVFVWVTSIATFGAIWTWVMILLAQLRFRKGLSAS ERAALKYRMWLYPVSSYLALAFLVLVVGLMAYFPDTRVALYIGPAFLVLLTVLFYTFKLQPTAEAQGSMRSVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|