Pseudomonas frederiksbergensis SI8, JZ00_RS14070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 24 58 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 365 446 4.0E-30
CDD cd18787 SF2_C_DEAD - - 326 454 1.09763E-55
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 102 484 52.673576
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 90 327 1.4E-76
MobiDBLite mobidb-lite consensus disorder prediction - - 12 84 -
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 100 485 2.0E-123
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 122 329 2.6E-52
MobiDBLite mobidb-lite consensus disorder prediction - - 68 84 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 328 482 2.8E-45
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 178 463 7.81E-71
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 127 302 2.9E-48
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 337 446 1.8E-28
CDD cd00268 DEADc - - 114 315 6.37581E-94

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.