Pseudomonas frederiksbergensis SI8, JZ00_RS10895

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas frederiksbergensis strain SI8 contig00004, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCGGTGAAAAAGGCCGGGATGCCTGCGCCGCCCGCGCGCATCTTTTCCGCGAGGGTGCCTTGGGGCGTGAGCACGACTTCGATTTCGCCGCTCAGCAGT TGCTGTTCGAAGAGGGCGTTTTCACCCACGTAGGAAGCCACCACCTTGCGGATCTGGCGGTCCACCAGCAGCACGCCGAGGCCGAAGCCGTCTACGCCGC AGTTGTTGGAGACCACGGTCAGGTCACGGGTGCCCTTGCGCTTGATCTCGGCGATCAGGTTTTCCGGAATGCCGCACAGACCGAAGCCGCCGGCGATGAT GGTCATGCCGTCCTTCAAGCCGTCCAGCGCTTCTTCGTAAGAATTCACGCGTTTGTCGAAACCTGCCATAGACACCTCTTTTATTCTTGAATGGGGTCGC AATGAAATGCAGTGTTGCGCCAAGTCATATATTTGTTAAGTTGATTTTTAGATTTGATTGATTGATAAAACTCAACAATTGCCCTTGGAGCGCAGCGACC
DNA Sequence for Gene
>JZ00_RS10895
ATGACCCTCAAGCAAATCCGTGCGTTCCTGGCCGTGGCCCAGAGCCTTAGCTTCGCCGTGGCCTGCGAGCGGCTGCATCTCTCCCAGTCGGCCCTGAGCT TGACGATCAAAGCCCTGGAAGAAGGGCTCGGTGGTCGCCTGTTCAGCCGCAACACGCGCAACGTGGCGTTGACGCCCGAAGGCGAATCATTACTTCCACT GGCCCGTCGGCTGGTGGCCGACTGGGACAACGCCGAAGACGAAATGCGCCAGCGCTTCACCTTGCAGCGTGGCCGCGTGACGCTGGCCGCGATGCCATCT TTCGCCGGCAACCTGTTGCCGCCGATCCTCAAGACCTTCCGCGCGCGCTTCCCGAATGTCAACGTCACGGTCAACGATGTGATCAACGAGCAGGTGCTGG AAATGGTCCGCGATCGTCATGTGGAACTGGGCGTGGCGTTCGAGCCCATGCAGGGCTCGTCATTGGCGTTCACGCCGTTGTACCTCGATCGTTTTGTCGC GGTGGTGCCCCTGGATTCGCCACTGGCCCAGCGCGACGAAGTCCAATGGCAGACCCTGCTGGAGCAGCCGTTCATCACCCTGCAACGGCCCTCTACCGTG CGGGTGATGCTCGAGGAACATCTGCAAGCGCGAGGCATGAAATTGCCGGTGGAATTCGAGAGTCATCAACTGGCGACCGTCGGGCGAATGGTTGCCAGCG GCCTCGGCGTGAGCGCCGTACCGGCCTTGTGTGTCGGCCAGATGCACGAACTGGGCGCCCGCTGCATCACCCTCGGCGATCCGGTGATCGAACGGGCCAT CGGCGTGCTGACCAAGCCGGGCTACGAGTTGTCGGCGGCGGCCCAGGCGTTGTTCGATACGTTCAGGGATCAGGATATCGGGACCCAGTTGATCGTGGGG TGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCACCGGGCCCGCAGATCAAAAGCTGGACGGGGCGGCCTTGAAGCCGACCTGTTTCCTTGGTGATCGCGTTCCCACAGGGGATGGCTGTGCGCTTCAGAT CAGCAGCGGTAGCAATTCTTCACACGGCACTTGCACCTTCAAATCCAGCAACTCATCAGCCCGGGTCTTGCCCCGGTTGATCGCCAGCAGCGGCTTGCCC TGATCCTTGATTGCCCGACAGAGGCGAAAGGCCGAATACGCCATCAACGAAGAACCCACCACCAACAGCCCATCCGCTTGTTCTACGGCTTGCATGGCGC GGGACGCTGTGGGGGCGGCGACGTTTTCTCCGAAAAAAACCACATCGGGTTTCAGCCGCTCGCCATTGCAATGAGGGCAACGGGGGATCTGGAAGCGCGC CTCGAATGCCGGATCCAGCAACGTATCGCCGTCCGGGGCTTGTACCGCGTCGACGCCGGCCAGGTAAGGATTCTGCGTTTCCATCATGAGTTGGATTTGC
Amino Acid Sequence
>LysR family transcriptional regulator
MTLKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEEGLGGRLFSRNTRNVALTPEGESLLPLARRLVADWDNAEDEMRQRFTLQRGRVTLAAMPS FAGNLLPPILKTFRARFPNVNVTVNDVINEQVLEMVRDRHVELGVAFEPMQGSSLAFTPLYLDRFVAVVPLDSPLAQRDEVQWQTLLEQPFITLQRPSTV RVMLEEHLQARGMKLPVEFESHQLATVGRMVASGLGVSAVPALCVGQMHELGARCITLGDPVIERAIGVLTKPGYELSAAAQALFDTFRDQDIGTQLIVG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site